Sardina pilchardus (sardine): 134101424
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Entry
134101424 CDS
T10667
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03018
RNA degradation
Brite
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134101424 (mtrex)
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134101424 (mtrex)
Spliceosome [BR:
spil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134101424 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
134101424 (mtrex)
Ribosome biogenesis [BR:
spil03009
]
Eukaryotic type
Pre-60S particles
Helicases
134101424 (mtrex)
Transfer RNA biogenesis [BR:
spil03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134101424 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134101424
NCBI-ProteinID:
XP_062411067
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All DBs
Position
14:18140092..18172824
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDDEQTSSSKAKPTPPADKTAGKHGKGKKEPSITKNKREVDNDGTDEV
VFGKKAKLETVSPEEINLADLMPQVKVEPVETVEGCTHEVALPANEDYKQLKPRVGKAAK
EYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKAL
SNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDEI
HYMRDSERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDYRPT
PLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSGGGGGKWDPKGRRGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLEFNTDEEKKLVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPSV
GKQLLKGTADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEDQYNAIEIPNEESVVTYYKIRQQLAKLAKEIEEFVRKPKYCLPFLQPGRLVKVKNEEA
DFGWGVVVNFSKKSNVKAADRDADPLYVVEVLVHCSKDSVKNAATESARPVPPGEKGEMQ
VVPVMLHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYSHPLHSDPSLEAVYTLCEKKALIAGDIKAAKRELKRARTVLQ
MDELKCRKRVLRRLGFATASDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQSTA
LLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSSEAKLDVDEETYLNAFRPHLM
DVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgacgaacaaactagttct
tccaaagctaaaccaacgccaccggctgataaaactgctggtaaacatggaaagggaaag
aaagagccctctattaccaagaataaaagagaagttgacaatgatggcacagatgaagtt
gtctttgggaaaaaggcgaagctcgaaaccgtatcgcctgaagaaatcaaccttgcagac
ctcatgcctcaagtgaaagtggagccagtggagaccgttgaaggctgtacacatgaggtc
gctctgccagcaaatgaagactacaaacagttgaaacctcgagttgggaaagcggcaaaa
gagtacccattcatactggaccccttccagagagaagccattctgtgcattgacaacaac
cagtctgttctagtgtcagcccacacatctgctggaaagacagtgtgtgcagaatatgcc
attgccctggccctgagggaaaagcagagagtgatcttcaccagtcccatcaaagccctg
agtaatcagaagtacagggagatgtacgaggagttccaggacgtgggactgatgaccgga
gatgtcaccatcaaccccacggcctcctgcctagttatgactactgagattttgcggagt
atgctgtacagaggctcagaggtgatgcgagaggtggcctgggtcgtgtttgatgagatc
cactacatgagggactccgagcgtggagtggtatgggaggagacgatcatcctgctgcca
gacaacgtgcactatgtcttcctctccgccaccatccccaacgccaaacagttcgccgag
tggatctgtcatctccataaacagccttgccatgtggtgtacacagactaccgccccact
cccttgcagcactacatcttcccagcagggggcgacggacttcaccttgtggtggacgag
aatggcgagttcagggaggacaacttcaacacggccatgcaggtcctgcgggacaccggc
gactccgggggcagcggcggaggaggagggaagtgggaccccaaaggcaggagaggaggg
acgaaagggccgtccaacgtgtttaagatcgtcaagatgatcatggagaggaacttccag
ccggtcatcatcttcagtttcagcaaaaaggagtgcgaggcctacgccctgcaggtgtcc
aagctggagttcaacacagatgaggagaagaagcttgtggaggaggtcttcaacaacgcc
atcgactgtctctccgacgaggacaaaaagcttccacaggtggagcatgtcctgccattg
ctgaagagaggcatagggatccatcatggaggtctcctgcccatcctcaaggaaaccatt
gagatcctcttctctgaaggcctgctcaaggccctgtttgccacggaaaccttcgccatg
gggatcaacatgccagctcgcactgtcctcttcaccagcgcccgcaagtttgacggcaaa
gactttcgctggatcacgtcgggcgagtacatccagatgtctggtcgagcgggcaggaga
ggcatggatgagaggggcatcgtcatcttcatggtggacgagaagatgagcccttccgtg
ggcaagcagctcctcaagggcacagcagaccctctgaacagtgcgttccatctgacttac
aacatggtgctgaacctgctgagagtggaggagatcaaccccgagtacatgctggagaag
tccttctaccagttccagcactacagggccgtgcccggcgtggtcgagaagatgaagaag
ctggaggatcagtacaatgccatcgaaatcccgaacgaggagagtgtggtcacctactac
aagattcgccagcagctggccaagctggccaaggagatcgaggagtttgtccgcaagccc
aaatactgcctgcctttcctccagcccgggcggctagtaaaggtcaagaacgaggaagct
gattttgggtggggtgtcgtcgtgaacttttccaaaaagtcgaacgtcaaggcggcggat
agggatgcggaccctctctacgtggtggaggttctggtccactgcagcaaggacagcgtg
aagaacgccgccaccgagtctgcacggcccgttcccccaggggagaagggcgagatgcag
gttgtacccgtgatgcttcaccttatcaccagcatcagctccgtccgcctctacatcccc
aaagacctgcggccctacgacaacagacagagcatgctcaaatccatccaggaggtccag
aagcgcttccccgacggcctgcccctgctggaccccattgacgacatgggcatcaaggac
cccgccctgaagaaggtcatccagaaggtggaggccttcgagcaccggatgtactcccac
ccgctgcacagtgaccccagcctggaggccgtctacacgctgtgcgagaagaaagccctg
attgcgggtgacatcaaggcggcgaagcgggagctgaagagggcgcgcaccgtgctgcag
atggacgagctcaagtgccgtaagcgcgtgctccgacgcctgggcttcgccaccgcctcc
gacgtcatcgagatgaagggccgcgtcgcctgcgagatcagcagtgctgacgagctgctc
cttactgagatggtgttcaacggcctcttcaacgacctgacagccgagcagtccacagcc
ctcctcagcgtcttcgtgttccaggaaaacgctaatgagatgcccaagttgacggagcag
ttggctggccccttacgacagatgcaggaatgtgccaagcgcatcgccaaggtctcttcg
gaggccaagctggacgtggacgaggagacgtacctgaacgccttcaggccgcacctgatg
gacgtggtctacacctgggccaacggctctacctttgcccagatctgcaagatgaccgac
gtctttgaaggcagcatcatccgctgcatgcggcgtctggaggagctgctgaggcagatg
tgtcaggcagccaaagccatcggcaacaccgagctggagaacaagttcgcagagggcatc
acgaagatcaagagggatatcgtttttgctgccagtctttacctctga
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