Sardina pilchardus (sardine): 134102409
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Entry
134102409 CDS
T10667
Symbol
frem1b
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
spil Sardina pilchardus (sardine)
Pathway
spil04512
ECM-receptor interaction
Brite
Lectins [BR:
spil04091
]
C-Type lectins
Lecticans
134102409 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134102409
NCBI-ProteinID:
XP_062412485
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Position
15:complement(12500760..12525497)
Genome browser
AA seq
2169 aa
AA seq
DB search
MEKVSYQQVLFILVAILDYVRAESLVRLNLGLEVPRGQAVFVTDKELRLKATGETNACKV
EVILNEPVTQRVGKLTPQVFDCQFLPDEVMYTHNGSPSLEEDTVMLRVYRFTDTDTYIET
FLLTVRIMESSSKLAEFGSVPLVVQEFYGLSNALDSNVLTFPTRPEVVCTVRLLTSETNA
PMLGQLVKEDPTQADQGEAQNAGPRKGRQASLSCPGNRPCLHGNREVRFLKVTCSEFLTS
HLKYQHLSPPSPEIDYIPIRVELRDKTSRALLEAESVWLPVLIHGAMPNHPPHAAFMSMF
ILEVDQFILTPMTTAALDAEDHETPQARLVFNVTNPPADGYITHLDDHTKPVGSFSWQDL
NEMKIAYQPPNSSLTRRSNYEVEFEAIDDSFASSAPIMVHFSIRTAETNAPRVSWNMGLD
LLEGQSRPITWENLQIVDNDNIKAVTLIAVDGPHHGKLSVRGGKGFMFKVQDLREGVVVY
QHSDSDTTRDYIIFRITDGRHSTRHKFPINILPKDDTPPFLINNVAFEVQEGGLVRVEEY
MLLASDLDSSDDYILYQLVTQPRAGEMVKKTSVYDAGVPVSSFLQRDLYQGLIYYRHSGE
EVFEDSFEFILSDSHQPPNLSDRQTVVVHVFPVKDQLPVEVSGTVRFITVKETEVVYLTQ
SHLHFRDPENSDTDLAYFITQPCFSLNKPGMPDAGRLFFTDTTHTMKKDYMVPVLKSFTQ
HRXQLVTMIXLLSQNAVNHHKVGYMPPIEDIGLEPLYVQFVFSVSDQHGGTLSGLIFNIT
VLPVDNQKPEMFTNLLRVEEGGAVFLTEEHLLIRDVDTPPEGLRVRLDAPPRHGRLELQG
TPLPEGHSFSLLDIRALRVRYIHDDSETLKDSLSLTVTDGTSSTQAELLVQVMPVNDEPP
QLGPGLRAGLSCAEGGRVQITVEYLFATDADSDDARLTYMLARAPSHGEIHRGGGPVDKF
SQQDLLQGMIYYVHTGGEVGPHSISDSVTLIVSDGEAGGQDVCCQGDVMPPPVPLHGTLP
VYDLNITVTPVNDKPPSVTIGDMFVVDEGSFACLCHGTLGTMDPDTNPNELIFHLETPPR
NGFIENTLPSPGFEKSNAGIKVVSFSLLHLNSGFINYVQARHQGLESTADHFVVSVTDGV
HKSTAVPFYIIINPTNDEPPTLLLNNFTVTEGGMKELTAAILDAVDLDAPPDVLTLTVTS
PPKHGALINGIYGLQMSRYKDMGQELLRRSLPAHNFTLTELRQGMKIVYMHDDTETLQDA
FTIQLTDGKHVVQGTAQVHIRPVNDEKPRLLKNAGMDMEVKGHRVISSVTLEAVDQDTPN
HQLYYILNAGPKFGILQLKTHRGWLDLNPGQNFTQEDVELNRLWYKHTTLTGFKGHDRFV
FYLSDVDNPSPPESFFISVHAPQKGDIALVTKPVELMEGERVILTTDHLLASDSGSSSEE
LVYAVSVPPKHGHLHAVQHPGMPLSSFTQMDVAAHRVCYTHDNSHTDDQDLFSFVITNGV
SSRTSSLMFLIDHSDRIPPTLATNTGLHVTEGGSQTLSSENLLLMDPDTALENLTYTVTQ
MPQYGHLLLRGVPLTLSQNCFTQVNINNMDLVYKHLAGPAHIDQFSFLPSDRTNRGYLEY
GQLKEVPVVFTIQVEQLDKTPPSLVSKGTPSTVETLHEGQHVIYITSKYLQVSDPDSPLQ
ELEFTIVRPPHFGHLENAHTGGYIKGRFTQKDLDQKAIRYIIPADMEVTADSFEFRVTDP
AGNTMLPEVLEMRWSRVELSATCYRVCENAGTLAIQVTRSGNSIDPAYVTIQVEEDTAKV
GKDFTHSTATLIQFDPGVNIKSWNIYLKDDGLEENHEKFDVILKAQKNAVLGPMDRASVE
IIDPRGGKCDPADLIDETKDHLLEVPLRVHQPQTVPKKERDQDPHTGIVWEGRPPRGDVP
NHGHFLDYSEGGAQDQPYHGQGKRLLVERNSHRVSQSDVVQRAEEKVYIHGLIPLRLVEE
RVVSSDQIPPVHSDVEITPIWSWTGHLLSEHKPGEVPLGDAPPNASDMRKRQRQRKSSKA
LSLDCPSGWTHYRKRCYILSPGVATWSSAQHACSLLRHSQLAGIHSTTDMKWMWRFAGKQ
PFWTGLTGSMGQWMWTDGKPVLFSKLQLNRDSSSDPSCVLAESQRKWTPKNCTTGDEYKY
ICSAAAQNI
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtcagctatcaacaggtgttgtttatattggtagccatcttggactatgtg
agagctgagagtctggtgcgactgaatcttggcctggaggtccccagaggacaggctgtg
tttgtgacggataaagagttacggctgaaggccactggggagacgaacgcctgcaaggtc
gaggtgattctcaacgagcctgtcactcagagggtgggcaagctcaccccccaggtattt
gattgccagtttctacctgatgaggtgatgtacacacacaatggcagcccgtcactagag
gaagatacagtcatgctgagagtctacagattcacagacactgatacgtatattgagaca
ttcctactcacagtcaggattatggagagcagcagcaagcttgcggagtttggaagcgta
ccccttgtggtgcaggagttctacggcctctccaatgccctagacagcaacgtgttgact
tttccaactcgcccagaggttgtttgcacagtgcgccttttgacctctgagactaatgct
ccaatgctggggcaactggtcaaagaggatcctactcaagcagaccaaggagaggcccaa
aatgctggaccaagaaaaggtagacaagccagcctctcctgccccggaaacagaccttgt
ctccatggcaacagggaggtacgcttcctgaaggttacctgcagtgagttcctaacttca
catctgaagtaccaacatctgagtccaccctcaccagagatcgattacatccccattagg
gtggaactgagagacaaaacctctcgggctttgttggaggcagaaagcgtgtggctgcca
gtgttgatccacggtgcaatgcccaaccaccctccgcatgcagctttcatgtccatgttc
atattggaggtggaccagttcatcctcactcccatgaccacggccgctttggacgccgag
gaccatgagaccccccaggctcggctggtcttcaacgtgaccaaccctcctgcagatggc
tacataacccacctggatgaccacaccaagcccgttggctctttctcttggcaggacctg
aacgagatgaagattgcctatcagccacccaatagcagtctgactcgccgcagtaactat
gaggttgaatttgaggccattgatgattcctttgcctccagtgccccaatcatggttcat
ttttcaattcgcacagcagaaacaaatgctcctcgagtgtcctggaacatggggttggat
ctgcttgaaggtcagtctcggccaatcacctgggagaacctgcagattgtggataatgac
aatatcaaagcagtcactctgatagctgtggacgggcctcatcatggcaaactcagtgtc
cgaggtggaaaaggcttcatgtttaaagttcaggatcttcgtgagggtgtggtggtgtac
caacactccgacagtgacaccacccgagactacatcatcttccgcatcaccgatggtcgt
catagcactcgccataagttccccatcaacatattgccaaaagatgacacacctcccttt
cttataaacaacgtggcctttgaggtgcaggagggagggctggtgcgggtggaggagtac
atgctcttggcctcagatctggactccagtgatgactacatcctgtaccagctggtcaca
cagccacgtgctggggagatggtgaaaaagacctccgtgtacgatgcaggagtccctgtt
agcagcttcctgcagagggacctgtatcagggcctgatctactacaggcactcaggagag
gaggtgtttgaggactcgtttgagttcattctctctgacagtcatcagcctccaaatctt
tccgatcgacagactgtggtggtccacgtgttccctgtcaaagaccagctgcctgtggag
gtgtcgggaaccgtgcgctttatcactgtgaaggagacggaggtggtgtacctcacacag
agccacctccattttagggacccagaaaacagtgacacagacctcgcctatttcattacg
cagccctgtttcagtctcaacaagcccggcatgccagatgcaggaagattattcttcaca
gataccacccataccatgaaaaaggattatatggtgccagtgctcaagtcattcacacag
catcgttgacaattagtcacaatgatatgactcctctctcagaacgcagtaaatcaccat
aaagtgggctacatgcctccgattgaggacatcgggctggagccactctatgtgcagttt
gtcttctctgtgagtgatcaacatggaggcactctcagtggcctcatcttcaacatcact
gtcttgccggtggacaaccaaaaaccagagatgttcaccaacctgctgcgagtggaggag
ggtggagccgtgttcctcacggaggaacacctgttgatacgggatgtggatacccctcct
gagggcctgagagtgaggctggatgctcctccccgccacgggaggctggagctacagggg
acccctctcccagagggccacagcttctccctgctggacatccgagctctgcgagtcagg
tacatccatgatgattctgagactttgaaggacagtttaagccttacagttacagatggc
accagctctacccaggctgagcttttagtacaggtcatgcctgtgaacgatgagcccccc
cagctgggtccagggctgcgtgccggactgtcctgtgctgaaggtggccgtgtgcagatc
accgtggagtacctgtttgccacagatgcagacagcgacgacgcacggctcacctacatg
ctggccagagcccccagccacggagagatacacagaggaggtggccctgtggacaagttc
tcccaacaggacctcctacaaggaatgatctactatgtacacacagggggagaagttgga
ccccactcaatctcagattctgtgacacttatagtgtctgatggagaggcaggaggccag
gacgtctgttgccaaggagatgtcatgcctccgcccgtccctttgcatggcaccctcccg
gtttatgacctcaatattacagtgaccccagtcaatgacaaacctccatcggtgaccata
ggtgatatgtttgtagtggacgagggctcctttgcctgtctgtgtcatgggactctggga
accatggatcctgacacaaaccccaatgaacttatcttccatcttgaaacacctcctcgt
aatggcttcattgagaacacccttccctcccctgggtttgagaagagtaatgctggaatt
aaagtggtgtctttcagtcttcttcacctcaactccggcttcatcaactacgtccaggca
agacaccagggcctggagtccacagctgaccactttgtggtgagcgtcactgatggggtc
cacaagtccaccgctgtgccattctacatcatcatcaaccccacaaacgacgagcctcca
actctccttctcaacaattttactgtgacagagggaggcatgaaagagctgacggcagcc
atcttggatgcggtggatctggacgcccctcctgacgtcctgaccctgactgtcacaagc
cctcccaagcatggcgccctaatcaatggcatctacggcctccagatgagccgctataag
gacatgggccaggagctgctgcgccgcagcctgcccgcacacaacttcaccctcacagag
ctccgacaagggatgaagatcgtgtacatgcatgatgacacggaaacccttcaggacgcc
ttcaccatacagctgacagatggcaagcacgtagtccaggggacagcgcaggtccacatc
cgaccagtcaatgatgaaaagccacggctgctaaaaaatgcaggtatggacatggaggtt
aaaggtcacagagtcatctccagcgtgacgcttgaggcagtggaccaggacaccccaaat
catcagctctactacatcctcaatgctggacccaagtttggcatactgcagctgaagaca
cacagagggtggctggatctgaatccaggacagaacttcactcaggaggatgtggagctg
aaccgactgtggtacaaacacaccaccctcactgggttcaaaggtcacgaccgctttgtg
ttctacctgagtgatgtggacaacccttcaccccccgaaagcttcttcatctccgtgcac
gctccccagaaaggtgacattgctctggtcactaagcctgtggagttgatggagggtgag
cgggtcatcctaaccacagatcacctgctagcctcagacagtggcagctcatcggaggag
ctggtttacgcagtgtcggtgccacccaaacatggccacctccacgcggtgcagcaccca
ggcatgccactgagctccttcacccagatggacgtggcagcacaccgtgtctgctacacc
cacgacaatagccacactgatgaccaggacctcttcagctttgtcatcaccaacggcgtg
tcctctaggaccagctctttgatgtttttgatagatcacagtgaccgcatccccccgact
ttggccaccaacacaggcctacacgtcacagagggcggctcccagaccctctcctctgag
aacctgctgctaatggaccctgatacagccctggagaacctgacctacacggtcactcaa
atgccccagtacggccatctgctcctaaggggtgtccctttaacattatcccagaactgc
ttcactcaggtcaacatcaacaacatggacctggtctacaagcacctggctgggccagcc
cacatagatcagttcagcttccttccttccgacaggaccaacagaggctacctggagtat
ggccagctgaaggaagtacctgtggtcttcaccatacaggtggagcagctagacaagacc
ccaccaagtctggtttccaaggggacacccagcaccgtggagactcttcatgagggccag
catgtcatctacatcacctctaaatacctccaggtgtctgaccctgacagcccactccaa
gagctggagttcaccattgttcggcccccacattttggacacttggagaatgctcataca
ggggggtatatcaaaggccgcttcacccagaaagacctggatcagaaggcgatacgttac
atcattccagctgatatggaggtgacggcagacagttttgagttccgtgtaactgatcca
gcaggaaacaccatgctgcctgaagtgttggagatgagatggtcacgtgtagaactgtct
gccacatgttaccgagtctgtgaaaatgcagggactctggccatacaggtgacccggagc
ggaaacagcatagaccctgcctacgtcacaatacaggttgaggaggatactgctaaagtg
gggaaggatttcacacatagcactgctacacttatccagtttgatccaggtgtaaatata
aaatcatggaacatttacctgaaagatgatggacttgaggagaaccatgaaaagtttgat
gtgattctaaaagcgcaaaaaaatgctgttctgggtccaatggacagagccagtgtagag
atcattgacccaagaggaggtaagtgtgacccggctgatcttatagatgagactaaagac
cacctgctagaagtgccccttcgtgttcatcagcctcagactgtgccaaagaaagaacgc
gaccaggatccccacactgggattgtatgggaaggccgccctccaaggggagatgtccca
aatcatgggcacttccttgattattctgagggaggtgcacaggaccaaccctatcatgga
caaggcaagagattactggtggaaagaaacagccacagagtatctcaatcagatgttgtg
cagagggctgaagaaaaagtctatatccacgggctgatccccttaaggctggtggaggag
agagttgtgagctctgatcagataccgcctgtccattctgacgtggagatcacccccatc
tggtcctggactggtcacctgctcagcgagcacaaacctggagaggtacctttgggagat
gcccctcctaatgcctctgacatgaggaaacgtcaacgccagcgaaagtcaagtaaggca
cttagtctggactgtccctctggctggactcactacagaaaacgctgttacatcctgagc
ccaggagtggccacatggagcagcgcccagcatgcctgctctctgctacgtcacagccag
ttggctggtattcactccacgactgacatgaagtggatgtggagatttgctggaaaacaa
cccttttggacagggctgactggatccatggggcagtggatgtggacagatggcaagcca
gtgttgttctccaaactccagctaaacagggattccagttctgaccccagctgtgtgctg
gctgaatcccagagaaaatggactccaaaaaattgcactacgggagacgagtacaaatat
atctgttcagccgcagctcaaaacatctga
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