Sardina pilchardus (sardine): 134102697
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Entry
134102697 CDS
T10667
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
spil Sardina pilchardus (sardine)
Pathway
spil03013
Nucleocytoplasmic transport
spil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134102697
03015 mRNA surveillance pathway
134102697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spil03019
]
134102697
Enzymes [BR:
spil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134102697
5.6.2.5 RNA 5'-3' helicase
134102697
Messenger RNA biogenesis [BR:
spil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134102697
mRNA cycle factors
Common to processing body (P body) and stress granule
134102697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
134102697
NCBI-ProteinID:
XP_062412873
LinkDB
All DBs
Position
15:complement(2449076..2470565)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEVLQNGPLDDSVAKTSQLLAELNFEEDEEDAYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEHEQLRARQIAA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPIEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICGTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGVITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMTTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQIGMIGAGPNHVAA
MNIPIPFNLMMPPMPPPAYLGQANGPAPGRGGLNKGGRGGRGGRQKTRGGAPHGGPGNMG
NSQASQDVASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtatgggccgagttctcagactctaaccttcctggataccgaggaa
actgagttgctcggagctgacactcaaggctctgaatatgaattcactgattttacattg
cctagtcaaacgcagactcaaggccaaactcagagtcagctggataatcaggtaaatggc
cccgacgaagttttacagaatggaccacttgatgactctgttgctaaaacaagtcaactt
ttagcggaactgaactttgaagaagatgaggaggatgcttattacaccaaggatctccca
ctgcatgcctgcagctactgtgggatccatgacccagcatgtgttgtgtactgcaacaca
agcaagaagtggttctgcaatggacgaggcaacacttctggaagccacattgtgaaccac
ctggtgagagccaagtgcaaggaggtgacgctccacaaggacggacccctgggagagact
gtgctggagtgctacaattgcggctgccgcaacgtcttcctcctcggcttcatcccagcc
aaggccgactcggtggtcgtgctcctgtgcaggcagccgtgtgcgagccagagcagcctg
aaggacatcaactgggacagctctcagtggcagccgctgatccaggaccgctgcttcctg
tcctggctggtgaagatcccctctgagcacgagcagctccgcgctcgccagatcgccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcccacggcgaccctggaggac
ctggagaagccgggagtggacgaggagccgcagcacgtgctgctgcgctacgaggacgcc
taccagtaccagaacatcttcggcccgctggtcaagctcgaggccgactatgacaagaag
cttaaagagtcccagacccaagacaatataactgtcaggtgggacctgggactgaataaa
aagcggattgcttatttctcattacccaagacggactcaggtgatatgcggctgatgcag
ggggatgagatctgtctccgctataaaggtgatctggctccgctgtggaaaggcatcgga
cacgtcatcaaagtgccagacaattatggagatgagattgcgattgaattgcgaagcagc
gttggagcacccattgaagtcacgcacaacttccaggtcgattttgtgtggaagtccacc
tcctttgatcgaatgcagagtgccctaaagacctttgctgtggacgagacctccgtgtcc
ggctacatctaccacaagctcctgggccacgaggtggaggacgtcatcatcaaatgccag
ctgcccaagcgcttcactgcccagggcctccccgacctgaaccactctcaggtgtatgcg
gtgaagacggtcctccagcgtcctctaagcctcattcaggggccacctgggacgggcaaa
acggtcacctcggccaccatagtgtatcacctggccaggcagggcaatgggccggtgctg
gtgtgtgctcccagtaacattgcggtggaccagctgacggagaagatccaccagacgggc
ctgaaggtggtgcgtctgtgcgctaagagcagggaggccatcgactcgcccgtctccttc
ctggccctgcacaaccagatccgcaacatggacagcatgcccgagctgcagaagctgcag
cagctgaaggacgagacaggcgagctgtcatccgcggacgagaagcgctatcgcgcgctg
aagcgcaccgccgagagagagctgctcatgaacgccgacgtgatctgcggcacgtgtgtg
ggcgcgggcgacccgcggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtgctcggcgccaagcagctgatc
ctggtgggcgaccactgccagctgggcccggtggtgatgtgcaagaaggcggcgaaggcg
gggctgtcccagtcgctgtttgagcggctggtggtgctgggcatccggcccatccgcctg
caggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgag
ggctcgctgcagaacggcgtcaccgcaggtgaccgcatcaagaaaggcttcgacttccag
tggcctcagccggacaagcccatgttcttctacgtgacccagggccaagaggagatcgcc
agctccgggacctcctacctgaacaggaccgaggcgtccaacgtggagaagatcaccacg
cgactcctgaaggccggcgccaagcccgatcagatcggcgtcatcacgccctacgagggt
cagaggtcgtacctggtgcagtacatgcagttcagcggctccctccacaccaaactctac
caggaggtggagatcgctagtgtggacgccttccagggccgcgagaaggacttcatcatt
ctgtcctgcgtgcgagctaacgagcaccagggcatcggcttcctgaacgacccccgtcgt
ctgaacgtggctctcaccagagcaaggtatggcgtgatcatcgtgggcaaccccaaggct
ctgtccaagcagccgctgtggaaccacctgctgaactactacaaggagcagaaggtgctg
gtggaggggccgctcaacaacctgcgcgagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctggagcgcgcttcatgaccacggccatgtacgacgccaga
gaggccatgatcccaggctctgtgtatgatcgcagcaacacaggtcgtccatccaacatg
tacttccagacccatgatcagattggcatgattggcgccggccccaaccacgtggcagcc
atgaacatccccatccccttcaacctgatgatgccacccatgccccctccagcctacctg
ggccaggccaacgggcccgctcctggccgcggagggctgaataaagggggccgaggcggg
cgtggcgggcgccagaagacgcgtggcggtgccccccacggcgggccgggcaacatgggc
aacagccaggccagccaggacgtggcctcccagcccttctcccaggggcccctgacccag
ggctacatctccatgagccagccctcacagatgagccagcccggcctctcccagccagag
ctctcacaggacagttacttgggggatgaattcaagtcccagatcgacgtggcgctgtct
caggactcgacataccagggagaacgtgcataccaacatggtggagttactggactgtca
cagtattaa
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integrated database retrieval system
