Spirosoma sp. SC4-14: WBJ53_07920
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Entry
WBJ53_07920 CDS
T11499
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spio Spirosoma sp. SC4-14
Pathway
spio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WBJ53_07920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spio03019
]
WBJ53_07920
03009 Ribosome biogenesis [BR:
spio03009
]
WBJ53_07920
Enzymes [BR:
spio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WBJ53_07920
Messenger RNA biogenesis [BR:
spio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WBJ53_07920
Ribosome biogenesis [BR:
spio03009
]
Prokaryotic type
rRNA helicases
WBJ53_07920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
UBA
AAA_19
Card1_endonuc
Motif
Other DBs
NCBI-ProteinID:
WXC17134
LinkDB
All DBs
Position
complement(1956296..1958338)
Genome browser
AA seq
680 aa
AA seq
DB search
MKTKNNNTDIQDDVLDQMPVEAVQTDENDMEAPVASADVEQAVDQVISVQEPTETAPKND
PNQLLFSSLNISDDLLKAVTDMGFVSPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGI
PALELIDVQDRSVQTLILCPTRELALQVADEIRKLAKYKRGVRIEAIYGGDSIDRQIRSL
RNGVHIVIGTPGRVMDHMERNTLKLDNVKMMILDEADEMLDMGFREDIESILDDMPQERQ
TILFSATMSKPIMQITQKFQKNPVLVKVVKKELTNTNIEQVYFEVKPKAKVEVMCRLIDM
YDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTSILVAT
DVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSMVGRDEKYRFREIQS
YTKVRVEKGVIPSFEDIVGVRKARFIEQIRHTIQEGQDLDLYADMLTQLHHAGFSTEQIV
AALVKRSMGLEKNEFADQNLGLEDDRRRERDDRRDRYGDRNDRRSEGRFDDRRGRGDNRF
GDRDRNDRGSARFDRNDDRRGRFGDRDRNDRSFGPREGGRGEGAGRNGYFDRDDKRTPRE
RDANMTRLMVTIGRKDYVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRV
LDAMEGNTIKGRRINIEVAR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaaaacaacaacacagatatccaggacgacgtactggatcaaatgccagta
gaagcggtgcaaaccgacgagaacgatatggaagctcccgttgcttctgctgatgttgag
caggccgtcgatcaagtaatttctgtgcaggagccaacagaaacggccccaaaaaacgat
cctaaccaacttcttttttcgagcctgaatatttccgacgacttgctgaaggccgtaacg
gatatgggatttgttagcccatcgcccattcaggccgaagctattcctcccatcctggat
ggccgcgatgtgattggccaggctcaaaccggcacgggtaagaccgcggcctttggtatt
ccagccctcgaattaattgatgtacaggatcgttccgtacaaacattgattctgtgccca
acgcgcgaactggccctgcaggtagccgacgaaatccgtaaactagccaaatacaagcgt
ggcgttcgcattgaagccatctatggtggcgactctatcgatcgtcagattcgttcgctt
cgcaatggcgttcatatcgttatcggtacgcctggtcgggttatggaccatatggagcgc
aatacgctcaagctcgacaatgtcaagatgatgatccttgacgaagccgatgaaatgctc
gacatgggcttccgcgaagatattgaaagcattctggacgatatgccccaagaacggcag
acgattctgttctcggctacgatgtcgaagccgatcatgcagatcacgcagaagttccag
aaaaatccggtactggtgaaagtggttaagaaagaattgaccaacaccaacatcgaacaa
gtctattttgaagtaaaacccaaagcaaaagttgaggttatgtgtcgtttgatcgatatg
tatgacctcaagctgcttctggtgttctgtaataccaaacgtaaggtcgatgagattgtc
gaagacctgcaaattcggggttatcaggccgaagggttgcatggcgatctgcgtcaggca
cagcgtaacaacgttatgagtaagttccgcgccggtacaaccagcattctggtagcaacg
gacgtagccgcccgcggtatcgatgtcgatgatgttgatgcagttatcaacttcgacatt
ccgctcgatgaagaatattatgttcaccgtattggccggacagggcgggcgggcaaatcg
ggccgggcgttctctatggttggccgcgatgaaaaataccggttccgcgaaattcagtct
tatactaaagttcgcgttgaaaaaggtgtaattccatccttcgaagacattgttggcgtt
cggaaagcacgctttatcgaacaaattcgacacacgattcaggaaggtcaggatctcgac
ctatatgctgatatgctgactcagctacaccatgccggtttctctaccgaacagattgta
gccgctctggtaaaacggagcatgggtctggagaaaaacgaatttgccgatcagaacctg
ggtctggaagacgaccgccgtcgggagcgcgatgatcgccgggatcgctatggcgatcgt
aatgaccgccggagcgaaggccgctttgatgaccgtcgcggtcggggtgacaaccgcttt
ggcgatcgggatcgtaacgaccgcggaagcgcacgattcgatcgtaatgatgaccgccgg
ggccgttttggcgatcgggatcgcaacgaccggagttttggtccacgtgagggaggtcgt
ggcgaaggagccggccgtaatggctatttcgatcgcgacgataaacgaactccccgcgag
cgcgatgcgaacatgactcgcctgatggtgacgattggccgtaaagattacgttcgtccg
ggcgacattgttggtgccattgctggcgaggccaacattccgggcaacagcatcggtagc
atcgatattttcgataagttcacctacgtagatgtaccgaaagatgtggccaaccgcgtt
ctggacgctatggaaggcaatacaatcaaaggacgccggatcaatattgaagtagcccgg
tag
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