Spirosoma sp. SC4-14: WBJ53_17585
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Entry
WBJ53_17585 CDS
T11499
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
spio Spirosoma sp. SC4-14
Pathway
spio02020
Two-component system
spio02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
WBJ53_17585 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
WBJ53_17585 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spio03021
]
WBJ53_17585 (rpoN)
Transcription machinery [BR:
spio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
WBJ53_17585 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Ribonuc_red_sm
LacI
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
WXC12796
LinkDB
All DBs
Position
4296167..4297618
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AA seq
483 aa
AA seq
DB search
MQKLSLSQSLQQKLSPQQIQFIKLLQIPTAELETRIEEELEINPALEEGMDEEYEQKEED
PFSDEFDDDYKDLNNDLDIDPYLQNEDYAGYKMQGDGNYSEEDREMPLATSSTLLDSLLQ
QFGYLQLNDHQRTIGLQLIGSIEADGYIRRSMQAIVNDLAFSQNVFTDTEELEEVLQKIQ
TFDPPGIGARSLQECLVLQLRRKDTTDPYVILAIRIIEDFFDEFSKKHYDKIQRRLNISD
DSLKKVIDIIIKLNPKPGSVESEGGSIQYLIPDFILTNNNGKLDLTLNAKNAPELRISRS
FADMLDTYDKSSKQNKSLKETVSFVKQKLDAAKWFIDAIKQRQQTLLKTMNAIVRFQYDF
FLSGDESKLRPMILKDIANLIDMDVSTVSRVANSKSVQTEFGIYPLKYFFSEGIATDSGE
DVSSREVKNILKDLIDNEPKLNPLSDDKLEKILNDRGYNIARRTVAKYREQLNIPVARLR
KQL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaattaagcctctctcagtcgcttcaacagaaactgtctcctcaacagatacag
tttatcaagctgttgcaaattcctacggccgagctggaaacgcgaattgaggaagagctg
gaaattaatccggcattggaggaagggatggatgaagagtatgagcagaaagaagaagat
cctttttctgatgagttcgacgacgattacaaagatctgaacaacgacctggatattgac
ccgtatcttcagaacgaagattatgctggctataaaatgcagggcgatggcaactatagc
gaagaagatcgcgaaatgccactagccaccagctcgaccctgctcgactcgcttcttcag
caatttggctatcttcagttgaacgaccatcagcgaacaattgggcttcagctcattggc
agcattgaagccgacggctacatccgccggtcgatgcaggccattgtcaacgacctcgct
ttttctcagaacgtgtttaccgacaccgaagagctggaagaagttcttcagaaaattcag
accttcgatccgccgggcatcggggcccgctccttacaggaatgcctggtcctgcaactc
cgccggaaagacactaccgatccttatgttattctggccatccgaatcattgaagatttc
ttcgatgaattctcaaaaaaacactatgataaaatccagcgtcggctcaacattagcgat
gattcactgaaaaaagtgatcgacatcatcatcaagctaaaccccaaaccaggttcggta
gagagcgaaggcggctctattcagtatctgattcccgattttattctgaccaacaacaat
ggcaaactcgatctgaccctcaacgccaagaatgcccccgaactgcgtatcagccgatcg
tttgccgatatgctcgacacctacgacaagagcagcaaacaaaacaaatcgctgaaagaa
acggtatcgttcgtcaagcagaaactcgatgcggccaaatggtttatcgacgccatcaaa
caacgccagcaaacgctgcttaagacaatgaatgccattgtccggtttcagtacgatttc
ttcctgtctggcgatgaatcgaagttgcgtcccatgatcctgaaagacattgccaacctg
attgatatggacgtttcgacggtttcgcgggtggccaacagcaaatcggttcagaccgaa
ttcggtatttatcccctgaagtatttcttctcggaaggtatagccaccgattcgggggag
gatgtcagcagccgggaagtaaaaaatatcctgaaagacctgatcgacaacgaacccaaa
ctaaacccactctccgacgataagctggagaaaatcctgaacgaccggggctataacatt
gcccggcgaaccgtagccaaataccgcgaacaactgaacattccggttgcccggctccga
aaacaactctaa
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