Spirosoma sp. SC4-14: WBJ53_18380
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Entry
WBJ53_18380 CDS
T11499
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spio Spirosoma sp. SC4-14
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spio03016
]
WBJ53_18380
Enzymes [BR:
spio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WBJ53_18380
Transfer RNA biogenesis [BR:
spio03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WBJ53_18380
Prokaryotic type
tRNA splicing ligases
WBJ53_18380
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WXC12950
LinkDB
All DBs
Position
complement(4508652..4510193)
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AA seq
513 aa
AA seq
DB search
MEVPFLIDDILTLGPIPEPLHNAFLRVANGLVQRADYSKERAMGLLAQMLQNPKKFAYSR
NKVTNLARSVYDLAKQGVLIPLSEVGATYLPPEPEPYVLAATGNQTERTFDLRTGPLPYA
VFGREHIEEGALKQMETAASLPISVAGALMPDAHQGYGLPIGGVLATTANTVIPFAVGVD
IACRMCLSVFDLPPTFLKREPHLLKRSLVEQTKFGIGGETREKYDESVMDLPEWRATKVI
RDLKDKAYRQLGSSGTGNHFVEWGIVEVYSDDAAAEGAHLNLPPGEYLALLSHSGSRGFG
GAVANYYSKLAMQKTRLPKQAAHLAWLDLNTEEGQEYWIAMNLAGDYASANHHEIHNKLA
KVLGEKPLVRIENHHNFAWKEQMPDGQEVIVHRKGATPAGPDVLGIIPGSMTKPGFVVRG
RGFADALNSASHGAGRVMSRTQAFNSITRSQLNKALRDADIELIGGDLDEAPMVYKDIET
VIGAQHDLVSVLAKFTPKIVRMADANRKEGRED
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaccatttttaattgacgacattctgacgcttgggcctattcctgagccgtta
cataacgcattcctgcgcgtggccaacgggctggtgcagcgagccgactactctaaagaa
agagcgatgggattgctggcgcagatgctccagaacccgaaaaagtttgcctattcgcgt
aataaagtcacgaatctggcgcggtcggtttacgatctggctaaacagggcgtactgatt
ccgctgagcgaggtaggggctacttacctgccacccgaacctgagccgtatgtactggcc
gctaccggcaaccagaccgagcgaaccttcgacctgcgaacgggaccattgccctatgcc
gtattcggtcgggagcatattgaagaaggtgccctgaagcagatggaaacggctgccagc
ctgcccatttcggtggctggtgcgctcatgcccgacgcccatcagggctacggattgccg
atcggtggggtgctggcaactacggccaatacggtgattccgtttgcggttggggtcgat
attgcctgccggatgtgtctgtcggtgttcgatctgccgcccacgtttttaaagcgtgaa
ccgcatctgttgaaacggtcgctggttgagcaaaccaaattcggaattggtggcgaaacc
cgcgaaaaatacgacgagtcggtgatggatttgcccgaatggagagccacgaaggtgatc
cgcgacctgaaagacaaagcctaccgacaactcggaagctccggtacgggcaaccacttt
gtggagtggggtattgtggaggtctatagcgacgacgcagcggcagaaggcgcacatctg
aacctgccaccgggcgaatatttggcgttgctgtcgcattcaggctcgcgcggattcggt
ggggcggttgccaactactactctaaactggccatgcagaaaacccgtttgccgaagcag
gcggctcacctggcctggctcgatctgaacaccgaagaagggcaggagtactggattgcc
atgaacctggccggtgactatgcgtcggccaaccaccacgaaattcataacaagctggcc
aaagtgctgggcgagaaaccgctcgtcaggatcgaaaatcaccacaattttgcctggaag
gagcaaatgcccgacgggcaggaggtaattgttcaccgcaagggggcaacgcccgccgga
cccgatgtgctcggcattattccgggctcgatgacgaaaccgggctttgtggtgcgtggc
cgtggctttgccgatgcgctgaattcggcttcgcacggggctggtcgggtgatgtcgcgg
acgcaggcgttcaacagcattacgcgctcgcagcttaacaaagccttacgggatgccgat
attgaactgatcggtggcgacctcgacgaagcgccaatggtttacaaagacatcgagacc
gttatcggtgcccagcacgatctggtatcggtactggcgaagtttacgcccaaaattgtc
cgcatggccgacgccaaccgcaaggaaggccgcgaggattga
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