Spirosoma sp. SC4-14: WBJ53_21780
Help
Entry
WBJ53_21780 CDS
T11499
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spio Spirosoma sp. SC4-14
Pathway
spio03030
DNA replication
spio03430
Mismatch repair
spio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WBJ53_21780 (dnaE)
03430 Mismatch repair
WBJ53_21780 (dnaE)
03440 Homologous recombination
WBJ53_21780 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spio03032
]
WBJ53_21780 (dnaE)
03400 DNA repair and recombination proteins [BR:
spio03400
]
WBJ53_21780 (dnaE)
Enzymes [BR:
spio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
WBJ53_21780 (dnaE)
DNA replication proteins [BR:
spio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
WBJ53_21780 (dnaE)
DNA repair and recombination proteins [BR:
spio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
WBJ53_21780 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
LysM1_NFP_LYK
Motif
Other DBs
NCBI-ProteinID:
WXC13613
LinkDB
All DBs
Position
5332939..5336574
Genome browser
AA seq
1211 aa
AA seq
DB search
MQFSHLHCHTQYSLLDGQADIKKLIKKAKGDNMPAVAITDHGNMFGVFEFVAEASKQGIK
PIVGCEFYVVEDHTRKQFTKEQKDIRYHQLLLAKNPQGYKNLAKLCSLGYMEGLYGKYPR
VTKALIDKYKEGLIATTCCIGAIVPKTILKKGEEAGEIEFKWWLDRFGEDYYVELQRHEI
PDQIKANEVLVKFARKYNVKIIASNDSHYVDRDDWVAHDILLCVNTGEKQSTPSMKEFSD
DEVMPKNTRFAFFSDQFYFKNTQEMSTLFHDLPEAIDNTNEIVDKVEVLKLKRDILLPNF
PIPQEFQLHTDDVANQWEYLKHLTFEGAKKRWGEIDQKAQERLDFELFTIKTMGFAGYFL
IVADFIKAGRDLGVMVGPGRGSAAGSAVAYCIGITNIDPIKYDLLFERFLNPDRKSMPDI
DTDFDDEGRQRVIDYVVDKYGKQQVAAIVTYGTMAAKSAIKDVSRVMDLPLPDANALAKL
VPDKPTYNMTLRRIFEDPIEGPGGLASIIQPEEVENVRRMRALESGDQSVGRTMKLIDTE
KVQNVLQQARRLEGTVRNTGVHAAGIIIAPDDLSNIVPVSTSKDTNLIITQYEGKVIEDA
GVIKMDFLGLRNLTIIKECLRLIKQNYGGFFVNGVETDIDDIPLDDPKAYELFQRGETNA
IFQFESDGMKKHMKDLKPDRFEDLIAMNALYRPGPIAYIPNYIARKHGREEVKYDLPEME
EYLADTYGITVYQEQLMLLSQKLGNFTKGDADILRKAMGKKQKDVLDKMKGKFMDGCAAN
GLNLKICEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKTYYQSEYMAAVLTSCLGNI
DKITFFLEECKNLGIPVLGPDVNESERVFGVNKKGEIRFGLGGIKGAGDAAVEAIIEERN
AGGAYKDIFDFAIRVNLRTVNKKTLESLAYAGAFDALDEYHRAQYFDIPQTETSAFLEKI
IRYANNYHAEKAAAQQSLFGSITGGEPMLPRPKPPIVPEWNQIEKLKFEKDVVGFYITGH
PLDEFKLELEGFCNCTLDKIYEVKTPEIKVAGIVTSLQTKIAKNGNPFCIFKIEDYSTAI
EMALFGDDYVRMGQYVDVGRFLHITGKTQNRWNSDQLEFKPTNIRLLNEMREKFCKEVRV
SLMLDVLNAQLINQINELINAHPGTCTLSLNVVDPIERIEVSLQARTVKVFPANTFLRAL
EAMDGVTCKVA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctcacacctccactgccacactcaatattcgctgctcgatgggcaggccgat
attaaaaagctgatcaagaaagcaaaaggcgacaatatgcctgccgtagccattactgac
cacggcaatatgtttggcgtattcgagtttgtggccgaagccagcaaacagggtatcaag
cccattgttgggtgcgaattttacgtcgtagaagaccatacacgaaagcagtttaccaaa
gagcaaaaagacattcggtaccaccagttgctactggccaaaaacccacagggctataaa
aacctggccaagctctgttcactgggctatatggaagggctgtatggcaaatatccgcga
gtaacaaaagctctgatcgacaaatacaaggaaggcctgatagcgactacctgctgcatt
ggggccattgtgccgaaaacaatcctgaaaaaaggcgaagaagccggcgaaattgagttt
aaatggtggctcgaccgctttggcgaagactattacgttgagctgcagcgccatgagatt
cccgatcagattaaagcaaacgaagtgctcgttaagtttgcgcggaaatataatgtcaaa
attatagcatccaacgattcacactatgtcgaccgcgacgactgggtagcccacgacatt
ctgctctgtgtgaatacgggcgagaaacagagtacgccttcgatgaaagaattcagcgac
gacgaggtgatgcccaaaaacactcgttttgcgttcttcagcgatcagttctatttcaag
aacacgcaggaaatgagcactttgtttcacgacttacccgaagccatcgacaataccaac
gaaattgtcgacaaggtagaagtgctgaaactgaaacgtgatattctgctgcccaacttt
cccatcccgcaggagtttcaactccataccgacgatgtagccaaccagtgggaatacctc
aagcatcttacctttgaaggagccaaaaaacgatggggcgaaattgaccagaaagcccag
gaacgccttgattttgaactgttcaccatcaagacaatgggatttgcgggctactttctc
attgtagccgatttcattaaggccgggcgcgacctgggtgtgatggtaggccccggacgg
ggtagtgccgctggtagtgccgtggcctactgcattggcattaccaatatcgaccctatt
aaatacgatttgctgttcgagcggttcctgaaccccgaccggaaatcgatgcccgatatc
gatacggacttcgacgacgaaggccgccaacgggtaatcgattatgtggtcgacaaatat
ggcaaacagcaggtggcagctattgtcacgtatggtacaatggctgccaaatcggccatt
aaagacgtaagccgggtgatggatttacccctgcccgacgccaacgcgctggccaaactc
gttcccgacaaacccacctacaatatgaccctccggcggatctttgaagatcctatcgaa
gggcctggtggcctggccagtatcattcagcccgaagaagtcgagaacgttcgccgaatg
cgcgccctcgaatcaggcgatcagtcggtagggcgaaccatgaaactgatcgataccgaa
aaggtacagaacgtattgcaacaggcccgacggctcgaaggaaccgttcggaatacaggg
gttcacgcagccggtatcattattgcccccgacgatttgtcgaacatcgtacccgtgtcg
acatccaaagatacgaacctgattatcacgcagtatgaaggaaaagtaatcgaagatgcg
ggtgttatcaagatggactttctggggctgcgcaacctcaccatcatcaaggaatgcctg
cggctcattaaacagaactatggcggtttctttgtcaatggcgttgaaacggatattgac
gatattcccctcgacgatcccaaagcctacgaactcttccagcggggcgaaaccaacgcc
atttttcagttcgaatccgacggtatgaaaaagcatatgaaggacctcaagcccgaccgc
ttcgaggacctcattgccatgaacgccctttaccgcccggggccaattgcctacattcca
aactacattgcccgaaaacacgggcgcgaggaagtcaaatatgaccttcccgaaatggag
gaatatctggcagatacgtacggcattacggtttatcaggagcagttaatgctgctgtcg
cagaaacttggcaacttcaccaaaggagatgccgacattctgcggaaagccatggggaaa
aagcagaaggatgtgctcgacaagatgaaaggtaagtttatggacggctgtgcagccaat
ggactcaacctgaaaatctgcgaaaaggtctggaccgactgggaagcttttgcgtcctat
gccttcaacaaatcgcactcaacctgctatgcgtttgttgcttaccagaccgcctacctc
aaaacctattatcagtcagaatacatggcagccgtattaacaagctgcctgggtaacatc
gacaagattacgttcttcctcgaagagtgtaaaaaccttggcattcccgtgcttggtcct
gacgtaaatgaatcggagcgggtattcggtgtcaataaaaaaggtgaaattcggtttggg
ctgggtggcattaaaggtgcgggcgatgctgccgtagaagccatcattgaagaacggaac
gcagggggagcctataaggatattttcgattttgccattcgggtaaatttacgcacagtg
aataaaaaaaccctcgaatcgctggcctatgccggtgctttcgatgcgctggacgaatat
caccgggcgcagtattttgacataccgcagaccgaaaccagcgcgtttttggagaaaatt
attcgctacgccaacaactaccacgccgaaaaagccgctgcccaacaatccttatttggg
tctattacgggcggagaacccatgttaccgcgccctaagcccccaatcgtgcccgaatgg
aatcagatcgaaaaactgaagtttgaaaaagatgttgttggtttctacatcacaggacac
ccactggacgaattcaaactcgaactggaaggattctgcaactgtacgctcgacaagatt
tacgaagtcaaaacacctgaaatcaaggtggcaggtatcgtaacgtcactacagaccaag
attgctaaaaacggaaatcccttctgtattttcaaaatcgaagattacagcaccgccatc
gaaatggccctctttggcgacgattatgtgcgaatgggtcagtatgtcgacgtgggtcgt
tttcttcacattacgggcaaaacgcaaaaccgctggaattccgatcaactggaatttaaa
ccgacaaacattcgtctgctaaacgaaatgcgcgaaaagttctgcaaagaagttcgggta
tcgctcatgctggatgtgttaaatgcgcaactcatcaaccaaattaacgaactgatcaat
gcccaccccggtacctgcaccttgtcgttaaatgtcgttgatccgatcgaacggattgag
gtgagcctacaggcgcgaacggtgaaggtattcccagccaacacgttcctgcgagctctg
gaagcgatggatggcgtcacatgtaaggtggcgtag
DBGET
integrated database retrieval system
