Spirosoma sp. SC4-14: WBJ53_31135
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Entry
WBJ53_31135 CDS
T11499
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spio Spirosoma sp. SC4-14
Pathway
spio03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WBJ53_31135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spio03400
]
WBJ53_31135
Enzymes [BR:
spio01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
WBJ53_31135
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
WBJ53_31135
DNA repair and recombination proteins [BR:
spio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
WBJ53_31135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
DUF8259
Motif
Other DBs
NCBI-ProteinID:
WXC15432
LinkDB
All DBs
Position
complement(7525639..7526457)
Genome browser
AA seq
272 aa
AA seq
DB search
MPELPEVEIRRQYLQASSLYQPISHIEVEDKKLLTTDYSTLLHQLEGRQFTGTWRVGKNL
FILTDSSTVIVHMHFGMTGDLEYYHSSIGRPRFARIVFEFTNGFNLGFICPRKFERVGII
ENIDAYLEQKKIAKDGLDISLADFKRNIGRKKALIKPVLLDQSVVAGLGNWIVDEVLFQA
FVHPEQRVDSLSNEQISRIHEAIQFVLETAIRHEATYRDFPLSFLIHVREWDNSPYDDLE
AHNYCPRCRTRIERSVVGGRTTFFCPKEQIIN
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagttgaaatcaggcgacaatacctgcaagcctcatcgctatat
cagccaatcagtcatattgaagttgaagacaaaaaattgcttactaccgactatagcacc
ttgcttcaccaactcgaaggtcgacagtttacgggcacttggcgggttgggaaaaattta
tttattctgaccgacagctcaacggttatcgttcatatgcattttggtatgactggcgat
ctggaatattatcatagctcgattggccgaccacgttttgcccgaatcgtatttgaattt
accaatggttttaatctggggtttatttgtccacgtaagtttgagcgagtaggaataatt
gagaatattgacgcttacctggagcaaaaaaaaatagctaaagatggcctggatatatct
ctggcagatttcaaaagaaacatcggccgaaaaaaagcattgataaaacctgtattactc
gatcagagtgttgttgcaggtttaggaaactggattgtcgatgaagtcttgtttcaggcg
tttgtgcatcctgagcaacgtgtcgactccctcagcaatgagcaaataagccgaattcat
gaagcaatacaatttgttctggaaacggccatccgacacgaagctacctatcgcgatttt
ccactcagttttcttattcatgtacgggaatgggacaattcgccatacgacgacttagaa
gcccacaactattgccctcgttgccgaacgcgcattgagcgctcagtggtggggggaaga
acaacattcttttgcccgaaagaacaaattattaactga
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