Spirosoma sp. SC4-14: WBJ53_31385
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Entry
WBJ53_31385 CDS
T11499
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spio Spirosoma sp. SC4-14
Pathway
spio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WBJ53_31385 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spio03019
]
WBJ53_31385 (recQ)
03400 DNA repair and recombination proteins [BR:
spio03400
]
WBJ53_31385 (recQ)
Enzymes [BR:
spio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WBJ53_31385 (recQ)
Messenger RNA biogenesis [BR:
spio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WBJ53_31385 (recQ)
DNA repair and recombination proteins [BR:
spio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WBJ53_31385 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
HTH_40
DUF6806
Motif
Other DBs
NCBI-ProteinID:
WXC15478
LinkDB
All DBs
Position
7584922..7587132
Genome browser
AA seq
736 aa
AA seq
DB search
MMQVDQRVHETIKERLKEIFGYSQFRGDQEAIIHSILAGRNTFVIMPTGAGKSLCYQLPA
IVSDGTAIVISPLIALMKNQVDQLNAFGINAQFLNSTLSKTEMNKVKKDTLNGSLKLLYI
APESLTKEENLDFLKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGDLPVIALT
ATATPKVQQDIQKNLQMEDADLYKTSFNRKNLYYEIKPKVDAKKQLIRYVKQNKGKSGIV
YCLSRKTVEEIAELLSVNDIKALPYHAGLDPQTRMANQDAFLNEDVDVVCATIAFGMGID
KPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCIMFYSYDDIVKLEKFNKDKPVTERD
NAKHLLTEMVSYSTLGVCRRRQLLGYFGEYLEKDCGFCDNCLKPTEKFKVHDEVILALQA
VLQTDQRFDVAHLSDVLTATDNQYVTSYEHNRLEVYGKGREFNESPEFWCSLLKQITIYG
YIEKDVDNYGILKLTQRGLNYIEDPYPITLSKDHDYDNAVAEQKEDEDKDSTPSAGGAAY
DEELLGLLKALRKKIAKEKNLPPYVIFQDPSMEEMATTYPTTREEMAQINGVGMGKVQKF
GKPFIDLIAKYVEDNEIETAKDVVIKSTVNKSKVKIYIIQQIDRKVDLEEIAESKTLSME
ELMEEIEHICYSGTRLNLDYYINQVMDEDRQDEIYDYFMNAESDNIAIAMREFGGDDFTE
QDLRLMRIKFLSEVAN
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggttgatcagagggtccatgagaccatcaaagagcggctaaaagagattttt
ggatatagtcagttccggggcgatcaggaagccattattcacagcattctagcgggccgt
aatacgttcgttatcatgcctactggcgcaggaaaatccctgtgttaccagctaccagca
attgttagtgacggaacagcaattgttatttctcctttgattgccctgatgaaaaatcag
gtcgatcagttgaatgcgtttggtattaacgcacagtttctgaattcgaccctgtcgaag
acagaaatgaacaaagttaaaaaggacaccctgaacggttctctcaaacttttatatatt
gccccagagtcgctaacaaaagaagaaaacttggactttttaaagaaagccaatatttca
tttgttgctattgacgaagcgcactgtatttctgaatggggtcacgacttccggcccgag
tatcgaaaaatccgtggaatagtcgacaatatcggcgacctgcccgtcattgctttaaca
gccaccgctactcccaaagtacagcaggacattcagaaaaacctgcaaatggaggatgca
gacctctataaaacatcattcaatcgcaaaaacctctactacgagatcaagcctaaagtt
gatgctaagaaacaacttatcagatacgttaagcaaaataaaggtaagtcgggtattgtg
tattgtttgagccgaaaaactgttgaagagatcgcagaactcctgagcgtcaatgacata
aaagcgttgccttatcatgcaggcctcgatcctcagacccgaatggccaatcaggatgcc
ttcctcaatgaagatgtggatgtagtttgcgctaccattgctttcggtatgggaatcgac
aaacccgacgttcggtttgttattcactacgatgcccctaaatcgctggaaggttattat
caggaaacgggccgggctgggcgcgatggcctggagggtaactgtattatgttttatagt
tacgacgatattgttaagctcgaaaaatttaataaagacaaacccgttacagagcgcgat
aatgccaagcacctgctaaccgaaatggtctcctattcaacactaggagtttgccgtcgg
cgccagttgctcggttattttggcgagtatctggagaaagactgcggtttttgcgacaat
tgcctgaaaccgactgaaaagtttaaagtacacgatgaggtcattctggctctacaagcc
gttttacaaacagatcaacgcttcgatgtagctcacttaagcgatgtattgaccgctaca
gataatcagtacgtaaccagctatgagcacaatcgactggaggtgtacggaaaaggccgg
gagtttaacgaaagccccgaattctggtgttcgttgttgaaacagatcaccatttatggc
tacatagaaaaggacgttgataactatggcatactgaaactaacgcagcggggcttaaat
tatatcgaagacccctatccgattacgctttcgaaagaccacgactacgacaatgccgtt
gccgaacagaaagaagacgaagacaaagattctaccccgtcggccggaggagcggcctat
gatgaagaactgctaggcttgctgaaagcattacgcaagaaaattgccaaagaaaaaaac
ctgcctccctacgtaatcttccaggacccctctatggaagaaatggcaacaacctatcca
accactcgcgaagagatggcgcagataaatggcgttggaatggggaaagtgcagaaattt
ggcaagcccttcatcgatctgatcgctaaatatgtagaagacaatgaaattgagacggct
aaggatgtagtaataaaatcgactgtcaataagtcgaaagttaagatctatatcatccag
caaattgatcgcaaggttgatctggaagaaattgccgagtccaaaacgctctccatggaa
gagctgatggaagaaatcgaacatatctgctattcgggaacacgactcaatctcgattat
tacattaatcaggttatggacgaagatcgccaggatgagatttacgattacttcatgaat
gccgaaagtgataatatcgccattgccatgcgtgagtttggcggagatgattttacggaa
caggatttgcgcctgatgcgcattaaattcctgtcggaggtagctaattaa
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