Spirillospora sp. NBC_01491: OHA34_16850
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Entry
OHA34_16850 CDS
T09711
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spiq
Spirillospora sp. NBC_01491
Pathway
spiq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHA34_16850 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spiq03021
]
OHA34_16850 (rho)
03019 Messenger RNA biogenesis [BR:
spiq03019
]
OHA34_16850 (rho)
Transcription machinery [BR:
spiq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OHA34_16850 (rho)
Messenger RNA biogenesis [BR:
spiq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OHA34_16850 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WUU93392
LinkDB
All DBs
Position
complement(3619736..3621898)
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AA seq
720 aa
AA seq
DB search
MSESSELLTDASSTAPAAPAEEAGAERATPRRRRTGTGLSAMVLPELKALASSLGITGTT
GMRKSQLIAAIQEKQGGQGQGSAGGEQGAAATEKTERPRRSRTAAKREAPAEQTAIAEAA
PAVADEQQAPAEKKAEKAEKTEKTERSERPEKAGRQGGRSAEKQSDKGGSEGRQNRESGE
RTRSESGSDDGEQQQGGRDGGGRDGRENRDGREGGRQRGRGGRERGEGRERGERGEGRER
GERGDRGERGDRGDRNDRGDRGERGDRGDRGDRNDRGDRGERGDRGDRGEQGGRQRGGQN
SGGGQHDDDDGSGRGRRGRRFRERNRGRGGRGERYEEPVLSDDDVLIPVAGILDILDNYA
FVRTTGYLPGPNDVYVSLAQVRKNGLRKGDVITGAVRQARDGERREKFNALVRLDTVNGM
EPDQAKGRVDFSKLTPLYPQDRLRLESDPGILTTRIIDLVSPIGKGQRGLIVSPPKAGKT
MVLQSIANAITKNNPECHLMVVLVDERPEEVTDMQRTVKGEVIHSTFDRPAEDHTTVAEL
AIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAAR
NIENGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLNRSLADKRIFPAVDVDASST
RKEEILMAPEELRVVWQLRRVLHALDTQQALELLLEKMRETKSNAEFLLQVQKTTVSDDR
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaatccagcgaactccttacggacgcatcgagcacggcacccgccgccccggcc
gaagaggccggcgccgagcgtgccaccccccggcgccgccggaccggcaccgggctgtcg
gccatggtgctgcccgaactcaaggcgctcgcgtccagcctcggcatcaccggtaccacc
gggatgcgcaagagccagctcatcgccgccatccaggagaagcagggcggccaggggcag
ggctcggcgggaggcgagcagggagccgctgcgacggagaagaccgagcgcccgcgccgc
agccgtaccgccgccaagcgcgaggcgccggccgagcagaccgccatcgccgaggcggca
cccgcggtcgccgacgagcagcaggctccggccgagaagaaggccgagaaggcggagaag
acggagaagacggagcggagcgagcggcccgagaaggccggccggcagggcggccggtcc
gccgagaagcagtccgacaagggcggctccgagggccggcagaaccgcgagtccggcgag
cggacccgctccgagagcggctccgacgacggcgagcagcagcagggcggacgggacggc
ggcggccgtgacggacgtgagaaccgcgacggacgcgagggcggccggcagcgcggacgc
ggtggccgtgagcgtggcgagggccgcgagcgcggtgagcgcggtgagggccgggaacgc
ggcgagcggggcgaccgcggcgagcgtggagaccggggcgaccgcaacgaccgcggtgac
cgtggtgagcggggcgaccgtggtgaccggggcgaccgcaacgaccgcggtgaccgtggt
gagcggggcgaccgtggtgaccggggcgagcagggcggccgtcagcgcggcggccagaac
tccggcggcggccagcacgacgatgacgacggcagcggcaggggccggcgcgggcgccgg
ttccgtgagcgcaaccgcggtcgcggcgggcgcggtgagcgctacgaggagccggtgctc
agcgacgacgacgtcctgatcccggtcgccgggatcctcgacatcctcgacaactacgcg
ttcgtgcggaccaccggctacctgcccggcccgaacgacgtgtacgtgtcgctggcccag
gtccgcaagaacggcctgcgcaagggcgacgtcatcaccggcgcggtccggcaggcgcgc
gacggcgagcggcgcgagaagttcaacgcgctggtccgcctcgacaccgtcaacgggatg
gagcccgaccaggccaagggccgggtcgacttcagcaagctgaccccgctgtacccgcag
gaccggctgcggctggagtcggacccggggatcctgaccacccggatcatcgacctggtc
tcgccgatcggcaagggccagcgcgggttgatcgtgtcgcctcccaaggccggcaagacg
atggtgctccagtcgatcgccaacgcgatcaccaagaacaaccccgagtgccacctgatg
gtcgtcctggtcgacgagcgtcccgaagaggtcaccgacatgcagcggacggtgaagggc
gaggtcatccactcgaccttcgaccgtccggccgaggaccacaccacggtcgccgagctg
gccatcgagcgcgccaagcggctggtcgagctgggccacgacgtggtcgtgctgctcgac
tcgatcacccggctcggccgcgcgtacaacctggccgccccggcgtccgggcgcatcctg
tccggtggtgtcgactcgaccgcgctgtacccgcccaagcggttcttcggcgcggcccgc
aacatcgagaacggcggctcgctgaccatcctcgccaccgcgctggtggagaccgggtcc
cggatggacgaggtcatcttcgaggagttcaagggcaccggcaacatggagctcaagctc
aaccggagcctggccgacaagcgcatcttccccgcggtggacgtcgacgcgtccagcacc
cgcaaggaggagatcctcatggcgccggaggagctgcgggtcgtctggcagctccgccgc
gtgctgcacgcgctcgacacccagcaggcgctggaactcctcctggagaagatgcgggag
accaagtccaacgccgaattcctgctccaggtccagaagaccacggtctccgacgaccgc
tga
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