Spirillospora sp. NBC_01491: OHA34_34050
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Entry
OHA34_34050 CDS
T09711
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spiq
Spirillospora sp. NBC_01491
Pathway
spiq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OHA34_34050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiq03019
]
OHA34_34050
Messenger RNA biogenesis [BR:
spiq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OHA34_34050
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WUU89413
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Position
7313751..7315436
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AA seq
561 aa
AA seq
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MSHPHPELSHPPTLAEGGLRIVALGGLGEIGRNMTVFEYGGRLLIVDCGVLFPETEQPGI
DLILPDFEYIRDRLDDIEAIVLTHGHEDHIGAVPYLLRERRDIPLVGSRLTLALLEAKLT
EHRIKPVTDVVREGETRSFGPFDAEFLSVNHSIPDALAVALRTPAGLVLATGDFKMDQLP
LDGRLTDLGGFARLGAEGIDLLMSDSTNAEVPGFVTSERNIGPVIDEVFRTAQERLIVAC
FASHIHRVQQVLDAAVANRRKVCFVGRSMVRNMGVARELGYLRVPEGIMVEQRELEDVPA
DRLVLVCTGSQGEPMSALSRMAGRDHQIRITDRDTVMLASSLIPGNETSVNRVINGLTRW
GARIVHKGNALVHVSGHASAGELLYVLNMTKPGNFMPIHGEWRHLRAHAKLAALTGVPDD
NIVIAEDGVVVDLVDGQARIVGAVPAGYVYVDGLSVGQVTETSLKDRRILGEEGFVSIVV
GIDSSSGKVVAGPEIHARGAGIVNEDFDQVIERLEAALQDAAGDGVNDVHQLHQIIRRTA
GKWVSDNYRRRPMIIPVLVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccatcctcaccccgagctctcgcatccgcccacgctcgccgaaggcgggctgcgc
atcgtcgcactgggcggtctgggggagatcggccgcaacatgacggtcttcgagtacggc
ggacgcctgctcatcgtcgactgcggcgtgcttttccccgaaaccgagcagccgggcatc
gatctgatcctgccggacttcgagtacatccgagatcggctcgacgacatcgaggcgatc
gtcctcacgcacggccacgaggaccacatcggggccgtgccctacctgctgcgcgaacgc
cgcgacatcccgctggtcgggtcgcggctcacgctggcgctgctggaggccaagctcacc
gagcaccgcatcaagccggtcaccgacgtcgtccgcgagggcgagacgcggtcgttcggc
ccgttcgacgccgagttcctctcggtcaaccactcgatcccggacgcgctcgcggtcgcg
ctgcgcaccccggcgggcctggtcctggccaccggcgacttcaagatggaccagctcccg
ctggacggccggctgaccgacctcggcgggttcgcccggctcggcgccgagggcatcgac
ctgctgatgtcggactcgaccaacgccgaggtccccggcttcgtcaccagcgagcgcaac
atcggcccggtgatcgacgaggtgttccgcaccgcgcaggagcgcctcatcgtcgcctgc
ttcgcctcgcacatccaccgggtgcagcaggtgctggacgccgccgtcgccaaccgccgc
aaggtgtgcttcgtcggccgctcgatggtgcgcaacatgggggtcgcgcgcgagctcggc
tacctgcgcgtgcccgagggcatcatggtcgagcagcgcgagctggaggacgtcccggcc
gaccggctggtgctggtgtgcaccggctcgcagggcgagccgatgtcggcgctgtcgcgg
atggccggccgcgaccaccagatcaggatcaccgaccgcgacacggtgatgctggcctcg
tcgctgatcccgggcaacgagacctcggtcaaccgggtcatcaacggcctgacccgctgg
ggcgcccgcatcgtgcacaagggcaacgccctggtgcacgtgtccgggcacgcctccgcg
ggcgagctgctgtacgtgctcaacatgaccaagcccggcaacttcatgccgatccacggc
gagtggcggcacctgcgggcgcacgccaagctggccgcgctcaccggggtgcccgacgac
aacatcgtcatcgccgaggacggcgtggtggtcgacctggtcgacggccaggccaggatc
gtcggcgcggtcccggccgggtacgtctacgtcgacgggctgtcggtcggacaggtcacc
gagacctcgctgaaggaccggcggatcctgggcgaggagggcttcgtgtccatcgtcgtc
gggatcgactccagctccggcaaggtggtcgccgggccggagatccacgcccgtggcgcc
ggcatcgtcaacgaggacttcgaccaggtcatcgagcggctggaggcggccctccaggac
gcggccggcgacggcgtcaacgacgtgcaccagctccaccagatcatccggcgcaccgcc
ggcaagtgggtgagcgacaactaccgccgccgcccgatgatcatcccggtgctcgtcgag
gtgtag
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