Spirosoma pollinicola: CWM47_04885
Help
Entry
CWM47_04885 CDS
T05236
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spir
Spirosoma pollinicola
Pathway
spir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWM47_04885 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spir03021
]
CWM47_04885 (rpoC)
03400 DNA repair and recombination proteins [BR:
spir03400
]
CWM47_04885 (rpoC)
Enzymes [BR:
spir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWM47_04885 (rpoC)
Transcription machinery [BR:
spir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWM47_04885 (rpoC)
DNA repair and recombination proteins [BR:
spir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWM47_04885 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
RPOC_hybrid
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
AUD01206
UniProt:
A0A2K8YU96
LinkDB
All DBs
Position
1117150..1121499
Genome browser
AA seq
1449 aa
AA seq
DB search
MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPGNNQHLDD
KDPNKFIAKMGAEALEMLLSRVELDELSYSLRHAAATDTSQQRKAEALKRLKVVEAFREA
NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAVLEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSIPEYPIL
GEGMTFYGTEEVIIGINEGKVSKHANIKCRVKVRDENGELVYKVIDTVAGRLLFNQAVPE
EVGYINELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFRGGLSIGLSDIMIP
EAKQGLVDDAKAEVQAVWDNYLMGLITENERYNQVIDIWTRVNSKLTETLMKQLEADQGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDCGTLRGLQVSALKDNEDI
VEPLSERILGRTTVHDVYDPLTKELIVASGELVTEEVAAHIDETSIETVEIRSVLTCESR
QGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNIAVDASIK
AKFDGLIEFEEMRTVQSEDNDGNPLTIVMGRSGEVRIVNPSDRSVVLISNNVPYGAFLRV
KDGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYREEFDEQTGFQEKVIIESR
DKAKNPAIVVQGTTTLTLHLPDNDGGPLQKSYNLPVGSRLVVKEGQKIKAGQPLAKIPRN
VGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGAIKRGNREIFIESRDGTKKKY
LVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKGPTAVQEYLVNEIQEVYRLQGVKI
NDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWSFREENDKVLDAKVVMDAGDSPNVK
PGQIVTSRQLRDENSGLKRRDMALVTVRDAMAAVSQPTLMGITQSSLGTDSFISAASFQE
TTKVLSEASIRGKRDVLDGLKENVIVGHLIPAGTGLRRYQTAIVGSKEELETITESREQY
ARSKKKATV
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaaaaagaacaaaaagctcaacagcgactttgccagcgtgacgatcagtctg
gcatcgccggagtctattttggagagttcctacggcgaggtaacacagccggagacaatc
aactaccggacctacaaacccgaaatgggtggcttgttttgcgagcgcatcttcgggcca
gtgaaggactgggaatgtcactgcggtaaatacaagcggattcgctataaaggcattatc
tgcgatcgttgtggtgttgaagtaaccgagaaaaaggtacgccgggagcgtatgggccac
atcgaactggtggtgcctgttgcgcatatctggtatttccgcagcttgcccaacaaaatt
gggtatctgctgggcctttcgaccaaaaaacttgatcaggtcatttactatgaacgctac
gttgttgtacagcctggcgtaaaagcagaagatggcattaatcaactcgatttcctgacg
gaagacgagtatctggacattattgacaaattgccgggtaacaaccagcatcttgacgac
aaagacccgaacaaattcatcgccaagatgggggccgaagcgttagagatgttgttgtcg
cgggtagagttagacgaactgtcgtactcgctacgtcacgcggctgcaacggatacgtcg
caacaacggaaagcagaagcgctgaaacggcttaaagtcgttgaagcattccgggaagca
aacggccgtattgaaaaccgtcctgaatggatggtgatcaagatggtaccggttattccg
cccgaacttcgtccgctcgtccctctggatggtggtcgttttgctacgtccgatttgaat
gacctgtatcgtcgggttatcattcggaacaaccgtctgaagcgtcttattgagatcaaa
gctcccgaagtaattctccgtaacgaaaaacggatgttgcaggaagccgtcgattcgctg
ttcgacaactcacgtaaagtgaatgccgttcgttcggaaggtaaccgtgccctgaagtcg
ttgtccgacatgttgaaaggtaagcaaggtcgtttccggcagaacttacttggtaagcgt
gtggattactctggtcgttcggttattgtggttgggcctgaattgaagctccacgaatgt
ggtctgccgaaagacatggctgccgaattgttcaagccgtttgttattcgcaaactgatt
gaacggggtatcgttaaaacggtgaaatcggctaagaaaatcgttgaccgcaaagaccct
gttatctgggacattctggaaaacgtactgaaaggccaccctgttttgttaaaccgggct
ccaacacttcaccgtttgggtatccaggcattccagccaaaattgatcgagggtaaagct
atccagttgcacccacttgtttgtaccgccttcaacgctgactttgatggtgaccagatg
gccgttcacgtgccactgggccaggaagctgtccttgaagcgtcgctgctgatgctggcg
tcgcacaatatcctcaaccctgctaatggtgcgcctattacggtaccctcgcaggacatg
gtattgggtctgtactacgtaacaaaaggtcgcaagagcattcctgagtacccaatcttg
ggcgaaggcatgacgttctatggtactgaagaggtaatcatcggtatcaacgaagggaaa
gtttccaagcacgccaacattaagtgtcgggttaaggtccgggacgaaaatggcgagctg
gtttataaagtcattgacactgtagcgggccggttgttgttcaaccaggctgttccggaa
gaggtgggctacattaatgaactgctgacgaagaagaaacttcagcaaatcattgcgctt
atcttcaaaatctcgggcggtgctcggacagctcagttccttgatgaaatcaaagagctt
ggtttccagatggcgtttagaggtggtctgtcaatcggtttgagcgacatcatgattcct
gaagcaaaacagggacttgttgacgacgcaaaagctgaggtacaggctgtttgggataac
tacctgatgggtctgattacagagaacgaacgctataaccaggttatcgatatctggacg
cgtgtgaactccaagctaaccgagacgctgatgaagcagctcgaagccgaccagggcggg
tttaactcaatttacatgatgatgcactcgggagcccgtggttcgcgtgagcagattcgt
cagttgggtggtatgcgtggtctgatggccaaaccgcagaaaaacctgcaaggctcagtg
ggtgagattatcgaaaacccgattctgtcgaacttcaaagaaggtcttgatgtattggag
tactttatctcaacacacggtgcgcggaaaggtctggccgatacggctctgaaaacggcc
gatgccggttacctgacccgtcgtttgcatgacgtagcacaggatgttattatcagtgaa
gacgattgcggtacacttcgcggtctgcaagtgtcagctctgaaagataatgaagatatc
gttgagccattatctgaacgtatcctgggccgtactacggttcatgatgtatatgatccg
ctaacgaaagagttaatcgttgcatcgggtgaattagtgactgaagaagttgctgctcac
atcgacgaaacgagcattgaaacagtcgaaattcgttcggtattgacttgcgaatcgcgt
caaggtgtttgcgccaagtgttatggccgcaacctggcatcgggccgcatggtagatatt
ggcgaagcggtgggtgtaattgcctcgcagtcgattggtgagccaggtacgcagttaacc
cttcgtacattccacgtaggtggtacggcctctaacattgccgttgatgcatcgatcaaa
gcgaaattcgatggtttgatcgagttcgaagaaatgcggacggttcaatcggaagacaac
gacggtaacccattgacgatcgtaatgggtcgctcgggcgaagttcggattgtgaatcca
agtgaccggagcgtcgttctgatcagcaacaacgtgccgtatggtgcattcctgcgggtg
aaagatggcgacatggtgaaaaagggcgacgatatttgcgcctgggatccttataacgcc
gttatcctgtctgaattgaccggtacgttgaacttcgacgctattgaagatggtattaca
taccgtgaggaattcgatgagcaaactggctttcaggagaaagtaatcatcgaaagccgc
gataaagcgaaaaacccggccattgttgtacaaggcacaacaacgttaacgttgcacttg
cctgataacgatggcggtccgttgcagaagagctacaacttacctgttggatctcgtcta
gttgtgaaggaaggtcagaaaattaaagctggtcagccgttggcgaaaattccacgtaac
gttggtaaaacccgtgatatcaccggtggtctgccacgtgtaacggaattatttgaagcc
cgtaacccgtcgaaccccgcagtagtaagtgaaattgatggcgttgtaacgtatggcgct
atcaaacgtggtaaccgggagatcttcatcgagtcgagagacggaacgaagaagaagtac
ctcgtgccgctgtcgaagttcatccttgtacaggacaatgactttgtacgcgccggtgct
ccattatctgacggtgccataacaccaagcgacattctggctatcaaaggcccgacggcc
gttcaggagtatctggtaaatgaaattcaggaagtatatcgtctgcaaggggtaaaaatc
aacgataagcacatcgaagccattgttcggcagatgatgcagaaagttgagatcatcgac
tcgggcgataccaacttcctcgaaggtcaggttgtggacaaatggtctttccgtgaagaa
aacgataaagttcttgacgccaaagtggtaatggacgctggtgattcaccgaacgttaaa
ccagggcagattgtaacgagccgtcaacttcgtgacgagaactcaggtctgaaacgtcgt
gatatggcccttgtgaccgttcgcgatgctatggctgctgtttcgcagccaacgctgatg
ggtatcacgcaatcgtctttaggtacagacagctttatctcggctgcttccttccaggaa
acgacgaaagtactgagcgaagcgtcgattcgtggcaaacgcgacgtactcgatggcttg
aaagagaacgtaattgttggtcacctaattcctgccggtacaggccttcgtcgctaccaa
acagcgattgttggctcgaaagaggaactggaaacgattaccgaatcccgcgaacagtac
gctcgcagcaaaaagaaggctacggtgtaa
DBGET
integrated database retrieval system
