Spirosoma pollinicola: CWM47_06975
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Entry
CWM47_06975 CDS
T05236
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spir
Spirosoma pollinicola
Pathway
spir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWM47_06975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spir03021
]
CWM47_06975
03019 Messenger RNA biogenesis [BR:
spir03019
]
CWM47_06975
Transcription machinery [BR:
spir03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CWM47_06975
Messenger RNA biogenesis [BR:
spir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWM47_06975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
AAA_25
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AUD01581
UniProt:
A0A2K8YVD6
LinkDB
All DBs
Position
complement(1644641..1646923)
Genome browser
AA seq
760 aa
AA seq
DB search
MLKKEELDMKLLSELHPIAEQFGIRNISKFTKEKLVYEIIKQESERPGPAPEEAAPAEEA
PRRGKRTKAVPAPVTDEAQAQAADSVASQPVEPVESAPSTPTYTETEAPEAAKPVQRARR
GREVVAQPTTATEPAVVADSSPVAPVAESTTPVAEPIAEPVSNENAPVETASETPQTDSQ
APRLPRENRERTPNPNQRNSPFGQPVRNRNDGDGNSTPNDRNFRTNNPRNDRNGRPDLNQ
QRNPRPDGTSQGPRDQRPRFDANRDRTEGSRDSNQRRDQRPRTQRVVTDETGLNYGGQAD
EEFMTPTVVTEDNAANMRTTGQPATADSATTVEPSETSTETQEGQQQQPQSESGQPEQPA
QPPQTQASREAQEYQNRIRRQYNQHIREFDGIIDNEGVLEIMQDGGYGFLRSADYNYLAS
PDDIYVSPSQIKLFGLKTGDTVRGAIRPPKEGEKYFALLRVSTVNGKTTEEIRDRIPFEY
LTPLFPEEQLHLSNRPDNYSSRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAITKN
HPEVYLIVLLIDERPEEVTDMARSVNAEVISSTFDEQADRHVKVSSMVLEKAKRMVECGH
DVVILLDSITRLARAYNTVVPSSGKILSGGVDANALHRPKRFFGAARNVENGGSLTIIAT
ALIDTGSKMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDVMASGTRREDLLLDKETLQ
RVWILRKHMADMNPMESMDFLLGHMKGTRSNEEFLISMNR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagaaagaagaattagacatgaagcttctctcggagcttcaccccattgccgag
caatttggcattcgtaatatcagcaaattcacgaaagaaaaactcgtttacgaaatcata
aaacaggaatccgaacgcccaggtccggctcccgaagaggccgctcctgctgaggaagcc
ccccgacgtggtaaacgcactaaagcggttcctgcaccagttacggatgaggcccaagct
caggcagccgatagcgtagccagccagcctgttgagcctgttgagagtgcccctagtacc
cctacatataccgaaaccgaagcaccagaagcggccaagccggttcagcgtgcccgccgt
ggtcgggaggtggtcgctcaaccgactactgctactgaaccagccgttgttgccgatagc
agcccggttgcgccagtagccgaaagcactacacctgtcgccgaaccgatagccgagccc
gtaagtaacgaaaatgcgcccgttgagactgctagtgaaacaccacaaacggattcgcag
gccccgcgtctgccccgcgaaaaccgcgaacgtacaccaaatccaaatcagcgtaatagc
ccgtttggacaacctgttcggaaccgcaacgatggtgatggtaactcaacaccaaacgat
cgtaacttccgaaccaataatccgcgtaatgatcgaaacggtcgtccggatttaaatcag
caacgaaatccacgtccagacggaacttcacagggaccacgcgatcaacgtccccgtttt
gacgccaatcgcgaccgtactgagggatcgcgtgattctaaccaacgacgtgaccaacgg
cctcgtacacaacgggttgttaccgatgaaacgggcttgaactacggtggtcaggccgac
gaggaattcatgacgccaaccgttgtaacggaagacaacgcggccaacatgcgaacgacg
ggccagcctgcaacggcagattcggctacgacagtcgaaccatcggagacatctaccgaa
acgcaggaaggccagcagcagcaaccccagtcggaatccggccaacctgaacaaccggcg
caaccaccacagacacaggcatcgcgtgaagcgcaggagtaccagaatcgtattcgccgt
cagtataaccaacacatccgcgagttcgatggcatcatcgacaatgaaggtgttctggaa
attatgcaggatggtgggtatggcttcctgcgctcagccgactataactacttagccagc
cccgacgatatttatgtgtcgccttcgcagattaaattatttggtctgaaaaccggcgat
acggtacgcggtgctattcgtccacccaaagaaggcgagaaatacttcgccttgctgcgg
gtttcgacggttaacggtaaaacaacggaagaaatacgggatcggattccatttgaatac
ctcactcctcttttcccggaagaacaacttcatttgagcaaccgtcccgacaactattcg
tcgcgggtactggacttgtttgcccctattggtaaaggccagcgtggcatgatcgtcgcc
cagcccaaaacgggtaaaacggtactgcttaaggaaattgccaacgctattaccaagaac
cacccggaggtgtatctgattgtgttgctgatcgacgaacgccctgaagaggtaacagat
atggcccgcagtgtgaacgctgaggtcatttcgtcaacgtttgatgaacaggcagatcgt
cacgtaaaagtgtcgagtatggtgctcgaaaaagcgaaacgaatggtcgaatgcggacac
gatgtcgtaattctgctggattcaattacgcgtttggctcgggcttacaacacggttgtt
ccttcatcaggtaagattctgtcgggtggtgtggatgcgaatgccctgcaccggccgaag
cgtttcttcggtgcggcccgtaatgtagaaaacggcggttcgttaacaatcatcgctacg
gcgctgattgataccggttccaaaatggacgaggttatcttcgaagaattcaaaggtacg
ggtaacatggaacttcagctcgaccgcaaactggccaacaaacgtgtgtatccggctatt
gacgttatggcctccggtacgcgtcgggaagatttgttgttagacaaagaaaccctgcaa
cgtgtctggattctgcggaaacacatggccgacatgaatcctatggaaagcatggacttc
ctgcttgggcacatgaaaggaacccggagcaatgaggagtttctgatctcaatgaaccga
tag
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