Spirosoma pollinicola: CWM47_07460
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Entry
CWM47_07460 CDS
T05236
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spir
Spirosoma pollinicola
Pathway
spir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWM47_07460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spir03019
]
CWM47_07460
Enzymes [BR:
spir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWM47_07460
Messenger RNA biogenesis [BR:
spir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWM47_07460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
UvrD-helicase
DUF530
Motif
Other DBs
NCBI-ProteinID:
AUD01671
UniProt:
A0A2K8YVL8
LinkDB
All DBs
Position
complement(1752634..1754067)
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AA seq
477 aa
AA seq
DB search
MQFSELSLIDPILKALAEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPIL
QLLNEERSKSTGGPRRIKALILTPTRELAIQIAESFESYGRHLNLRHTVIFGGVSQHSQV
NTLKSGIDVLIATPGRLLDLMNQGFVHLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPS
HRQSLFFSATMPVDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKDDKRKLLVHI
LDDKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEFLRD
IHKLIGKHVPVIDNHPFVLNISAAAVSATPSRQGQGRNDNRRGSGRPNNNGRSAGSSNNG
GQSRSQSPRSESQGNNASAPRREESSSRPSRSTSRPQTQSRGTGNSRFSNTSSDKNY
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttccgaattatcattaattgatcccatcctgaaggcccttgccgaagaagga
tatactaacccaaccccaatccaggaaaaagccataccgattttattgagccgccgagac
ttactgggttgcgctcaaaccggtactggtaaaacagccgctttcgctatccctattctg
caacttctcaacgaagaacgcagcaaaagcacaggtggtccacgacgcattaaagcgctg
attctgacaccaacacgcgaattagccattcagatagccgaaagttttgaatcgtatggt
cgccatttgaaccttcgtcataccgttatttttggtggtgtttcgcagcattcacaggta
aacacactgaaatcgggtatcgacgtattgatcgccacccccggccgtttgctcgacctg
atgaatcagggttttgtgcatcttcgtgatgtgcagttctttgtccttgacgaagccgac
cgcatgctcgacatgggctttatccatgacgtcaagaaagtcatcacaaaactgccatct
caccggcaatcgctgtttttctcagctaccatgccggtcgatgtagccaaacttgccgat
acgattttaaataacccggctaaagttgaagtgacgcccgtatcctctacggctgatact
atcgaacaagctatgtattttgttggaaaagatgataagcgcaaattacttgtacacatc
ctcgacgacaagaatattaaatcagcattggtttttgcccgtaccaaacacggagccgat
aaggtcgtaaaagaccttctgaaagctggtattggtgcggaggccatccacggcaacaaa
tcacagaacgcccgccagcgtgccctctcgaacttcaaaagccgggaaacacgtgtgttg
gtcgctaccgatattgccgcccgtggtattgacgtagatgaactgtcgcacgtgatcaac
tacgaactaccaaacataccagaaacctacgttcaccggattggtcgtactggccgggcc
gggcacgatggtattgccttatctttttgcgatgccgaagaaactgagtttctccgggac
attcataagctgattggcaaacacgttcccgtaattgacaatcatccatttgtactcaac
atttccgcagccgccgtatcagcaacgcctagccgccagggccagggccgcaacgataac
cgtcggggaagtggtcgcccaaataacaatggtcgttcagccggatcgtcgaacaatggc
ggtcaatcaagaagccaaagtccccgatctgaaagtcagggaaataacgcatcggcacct
cgacgggaagaaagtagcagccgcccgagccgaagcaccagtcgtccgcagacgcaaagc
cggggcactggaaacagccggttcagcaatacaagcagtgataagaattattag
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