Spirosoma pollinicola: CWM47_13260
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Entry
CWM47_13260 CDS
T05236
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spir
Spirosoma pollinicola
Pathway
spir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWM47_13260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spir03019
]
CWM47_13260
03009 Ribosome biogenesis [BR:
spir03009
]
CWM47_13260
Enzymes [BR:
spir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWM47_13260
Messenger RNA biogenesis [BR:
spir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWM47_13260
Ribosome biogenesis [BR:
spir03009
]
Prokaryotic type
rRNA helicases
CWM47_13260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_19
DUF7626
Helicase_RecD
Sec61_beta
Motif
Other DBs
NCBI-ProteinID:
AUD02720
UniProt:
A0A2K8YYL3
LinkDB
All DBs
Position
3173927..3176158
Genome browser
AA seq
743 aa
AA seq
DB search
MKTKTNKSADQDALMDIEKIALEMAASAGAPADVATSEPKTAKVPKKKVAKPATESTPEA
SFDDTASEIIAEGIAEKVVIIADEPMATAEETTAVNTPAVVEAAAPKVDPNQILFSSLAI
SAELLHAVTDMGFVSPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIPALDLIDIQDR
SVQTLILCPTRELALQVAEEIKKLAKYKRGVRIEAIYGGDSIERQIRSLKSGVHIVIGTP
GRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFSATMSKP
IMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKPKAKVEVMCRLIDMYDLKLLLVFCN
TKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTSILVATDVAARGIDVDD
VDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVKVDKGVI
PSFEDIVGVRKARFIEQLQVTIKESKDLNLYDDLLVQLNHAGFSTEQIVAALVKRSMGLE
KNEFADQNLNLEDDRRNGRDKYADRGRGDGAGRFEDRRGGRSDSSSRFGDRDGGSRFGSD
RRSDDRGGRNEGSSRFGSDRRNEGPAFGRDRAASSDRPRFNDRAEGAERKPYFDRDDQRA
PRERDANMTRLMVSIGRKDFVRPGDIVGAIAGEADIPGNSIGSIDIFDKFTYVDVPKDVA
NRVVDAMEGNTIKGRRVNIEVAR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaaacaaacaaatcagcagatcaggatgcccttatggacatcgaaaaaata
gccctggaaatggccgctagcgcgggcgctccagctgatgttgcaacgagtgaacctaag
acggccaaggttcccaaaaagaaagttgcaaaaccagcaactgaatcaactccagaagca
tcattcgacgataccgcatcggaaatcattgccgaaggtattgccgagaaagtcgtgatc
atcgccgatgagcctatggcaaccgccgaagaaactacggccgtaaatacgcctgctgtt
gtcgaagcagcagcccctaaagttgatccaaaccagattttattttccagcttagccatt
tcagctgagttactgcatgcggtaacggatatgggctttgttagcccgtcgccaatccag
gccgaagcgattccgccaattctggcaggtcgtgatgtaatcgggcaggcacaaaccggt
accggtaaaacggctgcttttggtattcctgctcttgacctgatcgacattcaggatcgt
tcggtacaaacgcttattctttgcccaacgcgtgaattagcgctacaggtagccgaagag
atcaagaaactggcaaaatacaagcgcggtgttcgtatagaagccatttatggtggcgac
tccattgagcggcagattcggtcgctcaaaagcggtgtgcatatcgtaattggtacgcct
ggccgcgttatggaccatatggaacgtaacacactcaaactcaacaacgttaagatgatg
attcttgacgaagctgatgagatgctggacatgggcttccgcgaagatatcgaaagtatt
ctggaagaaatgcccgaagagcggcagacgatcctgttctcggctacgatgtcgaagccg
atcatgcagatcacccagaaattccagaaagatccggtcttggtgaaagtcgttaaaaaa
gaactgacaaacgtcaacatcgaacaggtctattttgaagtaaaaccaaaagcgaaagtg
gaagtgatgtgtcggttaatcgacatgtacgatctgaaactgctgctggtattctgtaac
acgaagcgtaaagtcgacgaaatcgttgaagacctgcaaatccggggctatcaggccgaa
ggcttgcacggcgatctgcgccaggcgcagcggaataacgtaatgagcaagttccgtgcg
ggaacaaccagcattctggttgctaccgacgtagctgcccgcggtatcgacgttgacgat
gtggatgcggttatcaacttcgatattcccctcgacgaagaatattacgtacaccgtatt
ggccggacaggccgtgccggtaaatcaggccgggcgttctcgtttgttggtcgtgatgaa
aaatatcgtttccgcgaaatccagacctatacgaaagttaaggtcgacaaaggtgtcatt
ccatcctttgaagatatcgttggtgttcgcaaggctcgtttcatcgagcaattgcaagtg
acgatcaaagaaagtaaagacctgaacctgtatgacgatttactggtacaactcaatcat
gccggtttctcgaccgagcagattgttgctgccctcgtgaaacgcagcatgggtctggaa
aagaacgaatttgccgatcagaatcttaacctggaagatgatcgccggaatggccgcgac
aagtatgcggaccgtggccggggtgatggcgccggacgctttgaggatcgtcgtggtggc
cgtagcgacagttcgtcccgctttggtgatcgtgatggtggctcacgctttggtagtgat
cgccggagtgatgaccgtggcggccgtaatgaaggatcgtcccgctttggcagtgaccgt
cgtaatgaaggccctgccttcggtcgtgaccgcgctgcttcatcagaccgtcctcgtttc
aacgaccgtgcagaaggcgctgagcggaagccttatttcgaccgtgacgaccaacgcgct
ccccgtgaacgtgatgcgaacatgactcgcctgatggtgagcatcggccggaaagatttc
gttcgccctggtgacatcgttggtgccattgctggtgaagccgacattccaggcaacagc
atcggtagcattgatatcttcgacaagttcacctatgttgacgtaccgaaagatgtagcc
aaccgcgttgtagacgctatggaaggtaacaccatcaaaggtcgccgggttaatattgag
gtagcacggtaa
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