KEGG   Spirosoma pollinicola: CWM47_19580
Entry
CWM47_19580       CDS       T05236                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
spir  Spirosoma pollinicola
Pathway
spir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CWM47_19580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spir03019]
    CWM47_19580
Enzymes [BR:spir01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CWM47_19580
Messenger RNA biogenesis [BR:spir03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CWM47_19580
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SNF2-rel_dom Helicase_C_2 AAA_19 Flavi_DEAD
Other DBs
NCBI-ProteinID: AUD07391
UniProt: A0A2K8ZBZ2
LinkDB
Position
complement(4674820..4676358)
AA seq 512 aa
MNYLKATPVQEMAIPVILAGKDLIASAQTGTGKTAAYLIPLLDKISHTDHDHTSTLILVP
TRELAKQIDEQVEGFGYFVQANSIAIYGGGKGDDWDKQRKALETGADIIIATPGRLIAHM
QLGYVKFDKIDYLVLDEADKMLDMGFSDDIMNIVEKIPVKRQTLLFSATMPNKIREFSKK
LLTEPEEIRLAVSKPAAGIDQQFYLAFDNQKLPLLAHLIKNSTKPVQSMVLFTSRKSEVN
SIVRALSKLGYDSRGISSDLEQDDREVVLRDFKNKVFPILVATDVLSRGIDIDNLTHVVN
YDIPRDAEDYVHRIGRTARAATTGTAITFISDQDQNRIVNIEKLIEREVDKQSITEELGM
GKSPVFDPKRFSGLRGKGGSRGSGGSGRSGRDGGGRGDGGRGNGSRGDGRHSDGKRGDSP
RGDNRGQRRDGQTAPAPVERLPSTEAKNGSLETPVNGASETLAQVRPAVDGQLSDKPKRR
KKRRRGPKGEVPGDAASQPKQQADSVPVSDEK
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgaactacttaaaagccactcccgtacaggagatggccattcccgtcattctggccgga
aaagacctcatcgccagtgctcaaaccggtaccggcaaaacggcggcttaccttatcccg
ctgctcgataaaatctcccataccgaccacgatcataccagtaccctcattctggtgcca
acccgcgagctggccaaacagattgacgagcaggtggaaggttttgggtattttgttcag
gccaacagcatcgctatctacggcgggggcaaaggcgacgattgggacaagcaacgcaaa
gccctcgaaaccggtgccgacattattatcgccacaccgggacgactcattgctcatatg
caactgggctatgtcaaattcgataaaatagactatctggtgctcgatgaggccgacaaa
atgctcgacatgggtttttcggacgacatcatgaatatagttgagaagattccggtcaaa
cggcaaacgttgcttttctcggcgacgatgcccaacaaaatccgggagttctcgaagaaa
ttgctgaccgaacccgaagaaatcaggctggccgtgtcgaaaccagccgccggtattgat
cagcaattttacctggccttcgacaatcaaaaactgccgttactggcacatctgatcaaa
aacagtacgaaacctgtgcagagcatggtgttgttcacatcccgcaagtcggaagtgaat
agtatcgttcgggccttgagcaaacttggttacgattcgcggggtattagctctgatctt
gaacaggatgaccgtgaagtagtactgcgcgatttcaaaaacaaagttttcccaatcttg
gtcgctaccgatgttctatcacgaggtatcgacattgacaacctgacgcacgttgtcaac
tacgacatcccgcgcgacgccgaagattatgttcaccggattggccgtaccgcacgggcc
gccaccaccggaaccgccattaccttcatcagcgatcaggatcaaaaccgaatcgtcaac
atcgaaaaactcattgagcgcgaagttgataaacagtcgatcaccgaagagttaggcatg
ggcaaatcgccggtgttcgaccccaaacggttcagcggccttcggggcaaaggaggctct
cgtggaagcggtgggtctggccggagcggacgcgacggtggcggccgtggagatggtggc
cgtggaaacggctctcgtggagacggacgtcatagtgatgggaaacgcggggatagcccc
cgtggagacaatcgaggtcagcgtagggatggtcaaacggctcctgcgccagtcgagcgg
ttgccgagcacagaggccaaaaatggtagtctggaaacacccgtaaatggggcatcagaa
acattggcacaagttcgccctgctgtggacggacaactctccgataaaccaaaacgtcgc
aaaaagcgtcgtcgcgggcctaaaggcgaagtgccgggcgatgctgcctcccaaccgaaa
caacaggccgattctgtgccagttagtgacgaaaaatga

DBGET integrated database retrieval system