Stylophora pistillata (Smooth Cauliflower Coral): 111319758
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Entry
111319758 CDS
T05774
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111319758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spis03019
]
111319758
Messenger RNA biogenesis [BR:
spis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111319758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
DegS
Motif
Other DBs
NCBI-GeneID:
111319758
NCBI-ProteinID:
XP_022778236
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MDPDSDELVDSLVEANDMLLERVDTNLDEAAGLKSNKTNQTVAGAPGQQGTPIVSSWNRA
KKDTPGKKDTNFRFLMAKNIQRPQLKFKDKIDNSNTPFIPIIKRKPNALRPFEVDEISGS
GHLHENAQVPSSIADFVHRERVKGISSSSVNSTAHPYQYELEVFQPPENQLMLRKEELYD
ELEKTPFTMIETAEQLEQLCQHLATVTEFAVDLEAHSYRSFQGFCCLMQISTQHQDFLID
TLELRSELQILNDYFTNPNILKVLHGADMDIGWLQRDFGIYVVNMFDTGQAARVLNYEKY
SLAFLLKKFCDVTANKQYQLADWRIRPLPSEMVRYAREDTHYLLYICDRMHNDLIKRGNA
NNNLLQSVYSRSKDICLKCYEKPLFTSESYRKVLEKHKRTFNTAQMHAFRLLFAWRDNIA
REEDESCGFVLPNHMMFQIAETMPREAQGVLACCNPVPTLVKQYVNEIHMLIVQAKETAL
TSNKTISSSGASSQFESGSTTRQTVLVSPKVSQPSLIDSVNKPDLPTVNGDSAIVSHSPS
SFRRVFVSGPAVIRANPTISLFKILEDDLHTDGQKKAERIEASFQNPFQKVCCHSLSRFY
VV
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggatccagacagtgatgagctggttgacagtcttgtagaagccaatgacatgcttctg
gaaagagtggatacaaaccttgatgaggctgcaggcctgaaatcaaacaaaacaaaccag
acagttgctggagctcctgggcaacaaggaacaccaattgtgtcaagttggaacagagct
aagaaagacaccccggggaagaaagataccaacttccggtttctcatggctaaaaacatt
caacgaccacaactgaaatttaaagacaagattgacaacagcaacactccttttattcca
attataaagagaaagcctaatgctctgaggccttttgaagttgatgaaataagcggcagt
ggacatcttcatgaaaatgcacaagtaccatcatctattgctgactttgtgcatcgagag
agagtaaagggaatcagcagttcttctgtaaacagtacagcccatccttaccaatatgaa
cttgaagtgtttcaacctccagaaaatcagttgatgctacggaaagaggagctgtatgat
gaacttgagaaaactccattcactatgattgaaacagcagaacagcttgaacagctttgc
cagcaccttgcaactgtgacagagtttgcagtggatctagaggctcattcctacagatct
ttccaaggattttgttgcttgatgcagatatccacacagcaccaagattttctcattgac
acactggagctgcgcagtgagcttcaaatccttaatgactatttcaccaatcccaacata
ctgaaggttcttcatggagctgatatggatattggatggctgcagcgagactttggtatt
tatgttgtcaatatgtttgacacaggccaggctgccagagtgctaaactatgagaagtat
tccttagctttcctgctgaagaagttttgtgatgtcacagcaaataaacaataccaattg
gcagattggaggataagacctctgccttcagagatggtgcgctacgccagagaagacaca
cattatttgctatacatttgtgatcgtatgcataacgatctcataaaaagaggaaatgca
aataacaacttattacaatcagtgtactccaggagcaaggatatttgcttaaagtgctat
gagaaaccattatttaccagtgaatcttacagaaaagtactggagaaacacaagcgaaca
ttcaacactgcgcagatgcatgcattccgccttctgtttgcgtggagagataacattgca
cgagaagaggatgaaagctgcggttttgttctcccaaatcacatgatgttccagattgcg
gaaactatgccaagagaagcccaaggcgttcttgcctgttgtaatccagtccccacactg
gtcaagcagtacgtgaatgagatacatatgttgattgttcaagcaaaggagactgctcta
acctcaaacaagaccatctcttcttctggcgcttcatctcaatttgagtcaggaagcaca
acaaggcaaactgttctggttagccccaaagtatcccagccgtcgctgattgattcagtt
aataaaccagacctcccaactgttaacggagactctgccattgttagtcactcgccgagt
tcatttcgtcgagtttttgtgtccggacccgctgttatcagagcaaatcctactatatcg
ctatttaagattttagaagatgacttgcatactgacgggcagaagaaagcagaaagaatc
gaggcttcatttcaaaatccttttcaaaaggtttgttgtcactccttatcacgtttttac
gtcgtttga
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