Stylophora pistillata (Smooth Cauliflower Coral): 111320871
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Entry
111320871 CDS
T05774
Name
(RefSeq) collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111320871
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
spis00536
]
111320871
Glycosaminoglycan binding proteins [BR:
spis00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111320871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
CDH-cyt
Motif
Other DBs
NCBI-GeneID:
111320871
NCBI-ProteinID:
XP_022779335
LinkDB
All DBs
Position
Unknown
AA seq
1403 aa
AA seq
DB search
MFSSAAIRTFLIGISLFILVEAQDPLPTFPPIPGNPGSRGANGDPGDRGEPGPVGEEGPQ
GYDGNPGRPGPRGDPGEIGPAGPEGPPGGAIGAIGEKGPEPGPLKGIKGEPGTPGARGPP
GNPGKRGPLGQAGAQGERGRSGEPGPPGRPGQPGPQGQPGEDGSDGDSGETGETGEPGPP
GSPGPPGAPGMSGDVGFKGDQGEKGSKGSKGNQGVPGERGSPGLAGKSGFDGRPGDPGLR
GVTGKPGRQGPVGLRGSEGPPGQQGRPGQRGPRGVPGSPGIPGAKGDAGEQGIQGAPGEA
GEPGPPGEIGAKGDNGRDGAPGRSGVPGEKGSVGLTGEQGPSGQPGAPGNAGVPGAQGRS
GPPGDRGRAGRPGMRGRKGEKGGQGTPGTPGQTGPSGPVGKRGRTGSPGPPGPVGAPGPQ
GPSGLRGSPGPDGTPGRKGSTGSPGENGFNGAKGDKGSAGARGEPGQLGAKGPTGQPGVP
GRDGKTGAPGDPGADGSPGAPGQQGPQGNPGPSGLTGRKGSMGEPGVDGEPGAPGPQGAK
GETGGPGRRGLTGIPGKQGRQGERGERGQTGPQGPQGAPGSQGPPGLPGKPGETGSPGES
GVDGTPGTRGERGSQGDRGPPGVAGSSGDPGEPGVPGADGKAGERGLQGPPGPAGSPGLA
GLPGQQGRRGPPGAKGAKGDGGPTGERGADGKNGEPGQDGMPGPAGPPGPPGEKGEDGVN
GQDGTPGSRGDTGPQGPPGNPGQPGRPGRLGPSGPPGPEGPRGPRGDSGLKGPPGPPGRS
GPTGTIGQIGEPGPKGRKGVQGMPGKEGVPGSPGKPGQAGPPGPPGVAGPSGRDGANGQK
GAAGEPGRPGKDGLPGLPGNNGKDGEPGPPGSDGGPGEVGHPGPSGPKGDRGPMGPPGAP
GTGGSPGAQGPKGDSGPPGRNGRSGSPGSPGGRGPPGPKGEAGNPGANGSNGRNGTDGIN
GRPGLKGERGAPGEPGKAGDPGPAGIEGPKGDQGPRGSQGEKGRRGSDGVPGKRGDPGAP
GNQGPQGEKGDTGLPGEKGDKGWTGPKGATGPDGPQGERGPPGVDGVDGPPGLRGPPGAR
GNPGPPGRNGTAGEPGMKGPDGDPGEAGNEGPGGYKGPRGPPGPPGPPGEPGRPGLLEYL
TTANIEKGPGFRLYSSSRKEMPTQEIKPMDILRGLDAKEKEIDLKIKPDGTRKYPARTCY
DLFLDHKSYKNGMFWIDPNGGTIKDAIWVFCDKGKNSSCVYPKNSKISDLTIKAQFQDKE
DKWLSQAFKESEETELIEYDAHYTQLNFLKTFSNYANQNITYACRNSMAWEDGRYSIKLK
GSNEMEYHATSKTSLRPKVLSNGCMQSDSTGKWEKTVLEIDTRERNRLPIMDVSAYDIGG
KEQDFKLEIGPACFHHTVLTRTA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctccgctgcgattaggacatttctaattggaatttcattatttattctcgta
gaggcgcaagatcctctacctacatttcctcccataccaggaaacccaggttctcgagga
gcaaatggtgatccaggtgatcgtggagagccaggacctgtgggcgaagaaggaccccaa
ggatatgatggtaatccaggaagacctggtccaagaggtgatccaggagagatcggacct
gctggaccagaggggcctccaggaggtgcaattggagctattggggaaaaaggacctgaa
cctggtcctttgaaaggcatcaaaggtgaacctggaactccgggtgcaagagggccccca
ggaaacccaggaaaacgtggaccactagggcaagcaggtgcacaaggagagcgtggtaga
tcaggagagccaggaccccctggtcgtcctggccaacctggaccccaagggcaacctgga
gaggatggcagtgatggtgactctggagaaactggagaaactggagagcctggtccacct
ggttcaccaggtccaccaggagcacctggtatgtctggtgatgtgggtttcaaaggagac
cagggagaaaaaggatcaaaaggaagtaaaggaaaccagggagttcctggtgaaagggga
tctcctggtcttgctggaaaatctggtttcgatggacgacctggagaccctggactgcgt
ggtgtcacaggaaaacctggcagacaaggaccagtgggtctcaggggaagtgaaggaccc
ccaggacagcaaggacgaccgggtcaaagaggaccgagaggggttccaggttcaccaggt
attccaggagccaagggtgatgctggcgaacaaggcattcaaggtgcacctggagaagca
ggtgaaccaggtcctccaggtgaaataggagcaaagggtgataatggacgtgatggagca
ccaggcagaagtggagtgccaggagagaaaggatcagtgggtctcactggagaacaaggt
ccatcaggtcaaccaggagctcctggaaatgctggtgttccaggtgcgcaaggaaggtca
ggtccccctggcgacagaggacgagctggtcgcccaggaatgcgaggaagaaagggagaa
aaaggaggccaaggaaccccaggtacacctggtcaaactggaccttctggccctgttggc
aaacggggtcgaactggatcaccaggccctcccggtccagtcggtgcaccaggtcctcag
ggtccttctggtcttcgcggatcacctggtcctgacggtacacccggtcgaaagggatca
actggttcaccgggtgagaatggtttcaatggagcaaagggagataagggatctgcaggt
gcacgtggtgaaccagggcaacttggtgcaaagggacccacaggtcaaccaggagtaccc
ggacgagatggcaaaactggcgcgccaggtgacccaggagcagatggctcaccaggagct
cctggccaacagggtccacaaggaaaccctgggcctagtggattgactggaagaaaagga
tcaatgggagaaccaggtgtagatggtgaaccaggagccccaggtcctcaaggagccaag
ggtgaaactggaggaccaggaaggcgtggtctgaccggcattccaggaaaacagggaagg
caaggtgaacgaggagaaagaggacaaactggcccacagggacctcagggagcccctggc
agtcagggaccaccagggctacctggaaagcccggagaaactggatcaccaggggagagt
ggagtggatggaactccaggaacaaggggtgaacgtggctcgcaaggagatcgtggacct
ccaggtgttgctggttcctctggagaccctggtgagccaggagtacctggtgctgatggc
aaagctggagagagaggtcttcaaggcccacctggcccagctggttcccctggtctggct
ggtttaccaggacaacaaggacggcgaggtccccctggagcaaagggtgcaaagggagat
ggtggaccaactggagaacggggagcagatgggaagaatggagagccgggacaagatgga
atgccaggacctgctggtcctccaggcccaccaggagaaaagggtgaagatggtgtgaat
ggtcaagatggcactcctggtagccgtggcgatactggacctcaaggtcctccaggaaat
cctggtcaacctggaagaccaggacgattgggaccctcaggccctcctgggcccgaaggc
ccacgcggaccacgtggagattcgggtttgaaagggcctcctggacccccaggacggtca
ggacccactggaacaataggtcagataggtgaacctgggcctaagggaagaaaaggagtt
caaggaatgccgggaaaagaaggtgtcccgggatctccaggaaaaccagggcaagcaggc
cctcctggacctccaggagtggctggaccatcgggcagagatggtgcaaatggacaaaag
ggtgcagctggagaaccaggccgacctggtaaagatggccttcctgggcttcccggtaac
aatggaaaagatggtgagcctggacctccaggatctgatggtggaccgggagaagttggg
catccaggaccttccggaccaaagggtgacagaggaccaatgggaccccctggcgcaccc
ggaactggaggaagtccaggagcacaaggacccaaaggtgactcaggtcccccgggccga
aatggacgcagcggttcacctggttcacccggaggtcgtggtccaccgggaccaaagggt
gaagcaggtaatcctggagcgaacggcagcaatggaagaaatggtacggatggtataaac
ggacgaccaggtttgaagggagaacgaggtgccccaggagaaccaggaaaagcaggagac
ccaggtcctgctggtattgagggaccaaagggagatcaaggaccacggggatcccaggga
gaaaagggacgtcgtggaagtgatggtgttcctggcaaacgaggcgatcctggtgccccg
ggaaatcaaggacctcaaggagagaaaggtgacactggtctacctggcgaaaagggagac
aaaggttggacgggacctaaaggagcgactggacctgatggcccacagggcgagagagga
ccaccaggtgttgacggagtagatggacctccaggacttagggggccaccaggagcaaga
ggaaatcccggtccaccaggaagaaacggaacagcgggtgaaccaggcatgaaaggacct
gatggtgaccctggagaggcgggaaatgagggacctgggggatacaaaggaccacgcggg
cctccaggacctccgggacctcccggtgagccaggccgtccaggattactcgaatacttg
actactgcaaacattgaaaaaggtccaggattccgtttatactcaagcagcagaaaggaa
atgccaactcaagaaattaagcctatggatatacttagaggattggatgcaaaagaaaaa
gaaatcgatttgaaaataaaaccagacggtaccagaaaatatcctgcaagaacgtgttac
gatctgttccttgatcacaagagttacaagaacggtatgttctggatcgatcctaacggt
ggaacaatcaaggatgccatctgggtgttctgtgataagggcaagaattcgtcgtgtgtc
tatcccaagaactcgaaaatctctgaccttacaatcaaagcacaattccaggacaaggaa
gacaagtggctgagccaagcttttaaagaaagtgaagagaccgaattgattgaatacgac
gcccactacacacagcttaacttcctgaagacatttagcaactatgctaatcagaacatc
acctacgcctgccgtaactccatggcttgggaagatggaagatactccatcaaactcaag
ggctctaatgaaatggaatatcacgccacatctaagacctcgctcagacctaaagtactc
tccaacggatgcatgcaaagcgattctacgggtaaatgggaaaagacagttctagagatt
gataccagagagaggaatagactaccaatcatggatgtttcagcctatgacatcggcggt
aaagaacaagacttcaagcttgaaattggaccagcctgtttccatcataccgtcctaacc
cgtacggcttag
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