Stylophora pistillata (Smooth Cauliflower Coral): 111320936
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Entry
111320936 CDS
T05774
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111320936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spis03041
]
111320936
Enzymes [BR:
spis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111320936
Spliceosome [BR:
spis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111320936
Complex C
U5 SnRNP specific factors
111320936
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
SWI2_SNF2
nSTAND3
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
111320936
NCBI-ProteinID:
XP_022779416
LinkDB
All DBs
Position
Unknown
AA seq
2138 aa
AA seq
DB search
MADATARSLQYEYKANSNLVLQADRSLIERRGRDEATGEVVSLVGHIGGIKMGDKYQRTK
PPVSEEKKAKRQKLMEKDDFTKSKTSSSLLSDESSDLAGVRYRPKTRETKSTYEVLLSFI
QAAIGDQPRDILCGAADEVLIALKDDKMKDKERQKEIVSLLGGMPDERYALLVNLGKKIT
DYSVDRTLLNDDEVIDETYGVAVQFDEEEEEEDKDFDEVRDEESSDEEEGVEADTTMTLQ
GGLEEDRAQRTGDALHPRDIDAFWLQRELNKYYADAEASRSKAEEVLEILKSAKDDRELE
NKMMLLLGHDKFSFIRLLRKNKSMVLYCTLLATAQSAKEKKEIEEKMSADPDLASILHAL
TETEQEDLIQEERARKAANRKARIAADLDAIESDQTRGSRRILDLEDLAFKDGSHLMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPYEAGEERVSITSLPKYAQPAFEGYESLNRIQS
RLSNSALNTDENLLLCAPTGAGKTNVALLTILREIGKHINLDGTINLEEFKAIYVAPMKS
LVQEMVANFTKRLSTYGITVSELTGDHNLNKEQINSTQIIVCTPEKWDIITRKGGERTFT
QLVRLIIIDEIHLLHDDRGPVLESLVARTIRQIETTQELVRLVGLSATLPNYEDVATFMR
VNPAKGLFFFDNSFRPVPLEQQYIGVTEKKPIKRLQVMNDVVYEKVIEHAGKNQVLIFVH
SRKETSKTARAIRDLCLERDTLGHFLSEDSASTEVLRTEAEQAVNLELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA
LDVMQMLGRAGRPQYDTKGEGILLTSHSELQYYLSLMNQQLPIESQFISKLADNLNAEIV
LGTVQNAKEAVHWLGYTYLYIRMLRNPSLYGISHDEIEKDPLLEQRRADLIHSAASQLDK
NNLVKYDKKSGNFQVTELGRIASHYYCTQETIATYNSLLKPTLSEIELFRVFSLSSEFKY
ITVREEEKLELNKLLERVPIPVKESIEEPSAKVNVLLQAYISHLKLEGFALMSDMVYVTQ
SSGRLMRAIFEIVLNRGWAQLTDKCLNLCKMIDKRMWLSMSPLRQFKKIPMEVIKRIEKK
EFPWERYYDLGATEIGELVHMPKMGKTLYKFVHQLPKMELATHIQPITRSTLSVELSITP
DFQWDEKVHGNSEAMWIFVEDVDSEIILHHEYFLLKSKFATDEHSLKFFVPVFEPLPPQY
FIRIVSDKWLGSETQLPVSFRHLILPEKNPPPTELLDLQPLPVSALRNPAFEGLYKDKFP
YFNPIQTQVFNTMYNSDENVLIGAPTGSGKTICAEFAVLRLLQQTPDCRCVYVTPLQSLA
DQVYTDWQSKFGLQLGKNVVKLTGETSSDLKLLAKGNVIVSTPEQWDVLSRRWKQRKNVQ
NVHLFILDEAHLIGGESGPVMEVICSRMRYISSQIERNIRVVALSSSLANAKDVSQWLGV
GPTGLFNFHPNVRPVPLELHIQGFNITHTASRLIAMTKPTYQAIVKHSPKKPVIVFVPSR
RQTKLTALDLLTLSGAENDAQRFLHCTEEDLQPFVKRLNDKTLKETVSYGVAYLHEGLSD
GETKIVEQLFNSGAIQVVVVSRNLAWAIDTSAHLVIIMDTQFYEGKIHTYVDYPVTDVLQ
MIGRANRPLLDDSGKAVILCQASKKEYFKKFLYEPLPIESHLDHCLHDHFNAEVVTKTIE
NKQDAVDYLTWTFLYRRMTQNPNYYNLQGVTHRHLSDHMSDMVENTLNDLEQSKCLSIED
EMDVSPLNLGMIAAYYYINYTTIELFSVSLNAKTKLRGLIEIISSAYEYERLPIRHHEDT
TLKQLMNRVPHKVTNPKYNDPHVKTNLLIQAHMSRMQLSAEMQSDTETILGKAMRLVQAC
VDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQIPHFSSEIIKRCVDKGVESVFDIM
DLEDDERNKLLKLDDSQMQDVARFCNRYPNIELSFEIQDKDEISAGAPVNVVVDLDREDE
QPGPVIAPFFPGKREEGWWLVIGDTKNNGLISIKRLTLQQKAKVKLDFVAPSSPGNYSYT
LFFMCDTYMGCDQEYPFKINVGEAASGDEESGDSEADD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctacggctaggtcattgcaatatgagtacaaagcgaactccaatcttgtg
ttgcaagctgatcgttccttgatagagcggcgaggacgtgatgaagccacaggagaggtt
gtgtcccttgtgggacacattgggggaatcaaaatgggggacaagtaccaacgaacaaaa
cctcctgtatcagaagagaaaaaggccaaacgtcagaaactaatggagaaagatgacttt
accaagagcaaaaccagtagcagtcttctgtcagatgaatcatcagacctggctggtgtt
cgatacaggccaaaaacccgggaaaccaaatccacgtacgaagtccttcttagctttata
caagctgccattggtgatcagcctcgagacattctttgtggagctgcagatgaagtgtta
attgctctgaaagatgacaagatgaaggataaagagcgacagaaagaaattgtgtccctt
cttggtggaatgcccgatgaaagatatgcactgttggttaacttagggaagaagatcacg
gattactctgttgacaggactttgctcaatgatgatgaggtgattgatgagacttatggt
gtggctgtgcaatttgatgaagaagaggaagaggaagataaagactttgatgaagtccgt
gatgaagagtccagtgacgaggaggaaggagtggaggctgacacaaccatgactctccag
ggagggcttgaagaagacagagctcaaagaacaggcgatgctcttcatccccgagacatt
gatgccttctggttgcagcgagaactgaacaaatattatgccgatgctgaagcttcgaga
tccaaagctgaagaggtcctggagatcctgaagagtgcaaaggatgacagagagctggaa
aacaaaatgatgctactgcttggacatgataagttctcctttatccggttattgcggaaa
aacaagagcatggtgctgtattgtacattgcttgcaactgcacagagtgccaaggaaaag
aaggaaattgaagagaagatgagtgcagatccagatttggcctccatcctgcatgcgctg
acggagactgaacaagaagacttgattcaggaggaaagagcccgaaaggcagccaatagg
aaagcaagaattgcagcagatttggatgcaattgaatctgatcagactcgtggcagtcgg
agaattttagatctcgaagacctagcatttaaggatgggagtcatttgatggccaacaag
agatgtcagctgcctgatggatcattcagaaaacaaaggaaaggttacgaggaagttcat
gttccggctctgaaacccaaaccatacgaagcgggagaggaaagagtctccatcacaagc
ctccccaaatatgcacaacctgcctttgagggctacgaatctttgaacagaatccaaagt
cgactgagcaactctgctctaaacactgatgagaacctgttgctttgtgcaccgactgga
gctggaaaaaccaatgtggcgttattaaccatcttgagagagattggcaagcacatcaac
cttgatggtacaattaatctggaggaattcaaagccatttatgttgcacccatgaaatct
cttgtgcaggaaatggttgcaaattttacaaagagactcagcacttatggaatcacagta
tctgagttaacaggagaccacaacttgaacaaggagcaaataaacagcactcagatcatc
gtctgtaccccagagaaatgggacatcatcacccgtaagggaggagagagaacctttaca
cagctcgtccgcctcatcatcattgatgaaattcatcttcttcatgatgatcgaggtcca
gttttagaatctctcgttgcacgcaccattcgacagatagaaacaacccaggagcttgtg
cgactggttgggttgagtgccactttaccaaattatgaagatgttgcaacctttatgcgt
gtgaatccagcaaagggtttattcttttttgataacagcttcagacctgttcctttggag
cagcagtatattggggtcacagagaagaaaccaataaagagacttcaggtgatgaatgat
gttgtttatgagaaagtcattgaacatgcaggaaagaaccaagtgttgatttttgttcac
tccagaaaggagacaagtaaaacagctcgggccataagagatctttgcttggaaagagac
actttaggacatttcttgagcgaagactcggcaagcacagaagtgttaagaactgaagct
gaacaggctgtgaacttggaactcaaggacttgctcccctatggttttgctattcatcat
gctggtatgacaagagtggacagaactttggtggaagatctctttgctgacagacacatt
caagtgttggtctccacagccactctggcttggggagtgaacttgccagcacacacagtc
atcataaagggaacacagatttacaatcccgagaagggtcgctgggtggaacttggtgca
ttagatgtaatgcagatgctggggcgtgctggtcgtccgcagtacgacacaaagggagag
ggcatcttgttaacaagtcacagtgaattgcagtattatctttcactcatgaatcaacag
ctgcccattgaaagccagtttattagtaaactggctgacaatctcaatgctgaaattgta
ctggggacagtgcagaatgcaaaggaggcagtgcattggctaggctacacttacctctac
attcgaatgcttagaaacccttccttgtatggcatttctcatgatgagattgaaaaggat
ccacttctcgaacagcgaagggcagacctaattcattcagctgcatctcagctggacaaa
aacaacttggtgaaatatgacaagaaatctggaaactttcaggtgactgaattgggtcgt
attgccagccattattactgcactcaagaaaccattgccacctacaacagcctgctgaag
cccacactgagtgagattgaactcttcagagtgttttcactgtcttcggagttcaagtac
atcacagttagagaggaagaaaagctcgaactgaacaagctgttagaacgtgttcctatc
cctgtcaaggagagcatcgaagaaccaagtgcaaaggttaatgtgttactacaagcatac
atctctcacctgaagttggagggttttgctctcatgtctgacatggtttatgtcactcag
tcatctgggcggttaatgagagccatctttgaaattgtgttgaaccgaggctgggctcag
ttgacagataaatgtttgaatttgtgtaaaatgatcgacaaacgaatgtggctctctatg
agtcctctccgacagttcaagaaaatccccatggaggttataaaaagaatcgagaaaaag
gaattcccctgggagcgatactacgacttgggagccactgagatcggcgagttagtgcac
atgcccaaaatgggaaagacgctgtacaagtttgtacatcagctgccgaagatggagctt
gcgacccatatccagcccataaccagatccactcttagtgtcgagctttccatcacccca
gacttccagtgggacgagaaagttcacgggaactcagaggcgatgtggatttttgtggaa
gatgtggacagtgaaatcattttgcatcacgagtactttttgttgaagagcaagtttgcg
acggatgagcactcgttgaagttctttgtccctgtgttcgagccgcttcctcctcagtat
tttatcagaattgtatcagacaaatggctgggttcagaaactcagttaccagtttcattc
cgtcatttgattttacccgagaaaaacccgccgcccactgaacttctagatctacaacct
ctgcctgtttctgcgctcagaaatccagcatttgaaggtctatacaaggacaagttccct
tacttcaatcccatacagacacaagttttcaacactatgtacaactcagacgagaatgtt
ctcatcggtgcacccactggcagtggaaagactatctgtgcggagtttgcagttctacga
cttcttcagcaaacacctgattgtagatgtgtttacgtaaccccattgcagtctcttgct
gaccaggtgtatacggactggcagagcaagtttggattacaactggggaagaacgttgtg
aagctgacgggagaaacaagctctgacctcaaacttctcgctaagggcaacgtaatagtc
agcactcctgaacagtgggatgtattatctcgacgatggaaacaaaggaaaaacgtgcaa
aatgtgcatttgtttatcttggacgaagctcatttgatcggcggtgaatcggggcctgtg
atggaggtgatctgttctcgaatgaggtacatctcgtcacagatcgagaggaatatccga
gttgttgccctgagctcttctctggcaaatgccaaggatgtttctcagtggcttggagtc
gggccaactggattgttcaacttccatcccaacgtgagacctgtccctctggagcttcac
atacagggttttaacatcactcatacagcatctcgtctgatagccatgactaaacctact
tatcaagccatcgtgaaacattctcccaagaaacctgtcatagtgtttgtaccctcaaga
agacaaactaaactcactgcattggatctactaaccttgtctggcgccgagaacgatgcg
cagaggttcttacattgcactgaggaagatcttcagccttttgtgaagcgtttgaacgac
aagactttgaaggagactgtcagttatggcgtggcgtatttacacgagggactctccgac
ggtgaaacaaaaattgtggaacaactattcaactctggcgccattcaggtggtggtcgtg
tcacgcaatctcgcctgggcgattgacacgagcgctcatctggtgatcatcatggacaca
cagttttacgaaggaaagatccacacgtatgtagactatcctgttacagacgtgttgcag
atgattggccgagcaaacaggccattgttggacgattccggtaaggcagtgatcctctgc
caagcctcgaagaaggaatatttcaaaaaattcctttatgaacctttgccgattgagtcg
catttggatcactgtctacacgatcattttaatgctgaggttgtgacgaagaccattgag
aacaaacaggacgccgtagattacctgacatggaccttcctgtatcgcagaatgacacag
aatccaaactactacaatttacaaggtgtcactcatcgacatctgtcagatcacatgtca
gatatggtggagaatacccttaacgacctggaacaatctaagtgtctgtccattgaagat
gaaatggatgtatcgccgttgaatcttggaatgatcgctgcttattactacatcaactac
acaaccattgagctgttcagtgtgtcactaaacgcaaagacaaagctacgaggcttgata
gaaattatctcgtcagcttatgaatacgagagacttcccatcaggcaccacgaggacacc
actttaaaacagctgatgaatcgagtgccccataaagtcacgaatcccaagtataacgac
ccacacgtcaagacaaacctgcttatccaagctcacatgtccaggatgcagctttcggct
gagatgcagtcagacacagagaccattcttggcaaggccatgcgtcttgtccaagcctgc
gtagatgtgttgagtagcaacggatggctgtcacctgcgctggccgctatggagcttgcc
caaatggttacacaggccatgtggagcaaagattcctacctgaaacagattcctcacttc
agctcggagataatcaaacgatgcgttgacaagggagtggaatcagtgtttgacatcatg
gacttggaagacgacgagagaaacaaacttttaaaactggatgacagccagatgcaggat
gtcgccagattttgtaaccgttatccaaacatcgaattgtcctttgagatacaggataag
gacgaaatctctgcgggcgctcctgtgaatgttgtcgtggaccttgatcgtgaggatgag
cagccaggcccggtgattgcaccgttctttccgggaaagagagaagagggttggtggcta
gttatcggggacaccaagaacaatggattaatttcgattaaacgcctcacgcttcaacag
aaggccaaggttaaacttgattttgttgctccgagctcgccgggtaactactcctatacg
ctgttcttcatgtgcgacacatacatggggtgtgatcaagaatatccgtttaagattaac
gtcggagaagccgccagtggagacgaggaaagcggcgacagcgaagctgatgattaa
DBGET
integrated database retrieval system
