Stylophora pistillata (Smooth Cauliflower Coral): 111321675
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Entry
111321675 CDS
T05774
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03013
Nucleocytoplasmic transport
spis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111321675
03015 mRNA surveillance pathway
111321675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spis03019
]
111321675
Enzymes [BR:
spis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111321675
5.6.2.5 RNA 5'-3' helicase
111321675
Messenger RNA biogenesis [BR:
spis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111321675
mRNA cycle factors
Common to processing body (P body) and stress granule
111321675
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
NPHP3_N
SLFN-g3_helicase
Helicase_RecD
SRP54
AAA_16
TraI_hel_assoc_N
nSTAND3
ATPase
AAA_22
PhoH
AAA_7
AAA
Motif
Other DBs
NCBI-GeneID:
111321675
NCBI-ProteinID:
XP_022780359
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MSTVDSYGPASQTLTFLDTEEADFGADTQGSEYEFHDFTVPSQTQTQSQASQPEPSQPLV
NGNVAEKKEDLANGPATGNDEAKADGTVSKVSNSLGELNFEEDEDETFYSKDLPAYACRY
CGVHDPASVVQCIQCKKWFCNGRGNTAGSHIVNHLVRAKHKEVTLHKDGPLGETILECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCATQSNSKDMNWDQAQWQPLINDRCFLSWLVKV
PPDEDQLRARQISAQQINKLEELWKDNPEAKLEDLDKPGVDDEPQQVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNIVVRWDIGLNKKRIAYFSFPKTNDDMRLMPGDELRLR
YVGELHKPWQGVGHVIKVPNNFGEEVGIELRSNLGAPVECTHNFVVDFVWKSTSFDRMQT
GMKTFAVDETSVSGYIYHKLLGHEVEEQVVKCTLPKRFSAQGLPELNHSQVYAVKTVLQR
PLSLMQGPPGTGKTVTSASVVYHLAKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLC
AKSREAIDSPVAFLALHNQVRNMDSVPELQKLQQLKDEQGELSAADEKRYRSLKRNCERE
LLQHADVICTTCVGAGDPRLSKFRFRTVLIDESTQATEPECMVPVVLGCKQLILVGDHCQ
LGPVVMCKKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPSLSEFPSNLFYDGTLQNGV
TVAERQQTGIDFPWPVPDKPMFFYATMGQEEIASSGTSYLNRTEAANVEKIATRFLRAGV
KPEQIGVITPYEGQRAYIVQYMQFSGSLHANLYLEIEVASVDAFQGREKDYIILSCVRSN
EHQGIGFLNDPRRLNVALTRAKYGIIVIGNPKILSRQPLWNHLLNYYKENKALMEGPLNN
LKESMIQFSKPRKLVNRTNPGGRFMSSTMFDAREALIRGSVYDRQIPQAPMDPAAFHDTY
FHTHDRLSYIGAERTIPPAAAARIPVPVGMFIPPVPPPHHSYFGQPLAGRMPHGRPVQQP
RQRNQRNHHHQQPMAYAPHMPASQASQDASQPLSQGPLTQGGMSMSQPMASQPLSQPDLS
QDSYLGDDFNLKSQADAVLSQDSTYQGERGGYMNSLPDYSQPNYASQY
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtagattcctacgggcctgcatctcaaacgttgacttttttagacactgaa
gaagctgatttcggtgcggatacacaaggaagcgagtacgaatttcacgattttacagta
ccttcgcaaacacaaacccaatctcaagcttcacaacctgaaccgagccaacctttggtc
aatggcaacgtcgcagaaaaaaaggaagatctagctaacggcccagcaacgggaaacgat
gaagctaaagcagatggtactgtttctaaggttagcaactctttaggggagcttaacttc
gaagaagacgaggacgagaccttttactcgaaagatcttccagcctacgcttgcaggtat
tgtggagttcatgacccagcatctgttgtgcagtgcattcagtgtaagaagtggttctgt
aatgggagaggaaacacagctggcagtcacattgtaaaccaccttgtaagagccaagcac
aaagaggtgacacttcacaaagatggtcctttaggagagaccattttggagtgctacaat
tgcggttgccgtaatgtgttcttgttgggatttattcctgccaaggctgattcagttgtg
gtgttactgtgcagacaaccctgtgcaacacagagtaactccaaggacatgaactgggac
caagcacagtggcagcctctgattaatgataggtgcttcttgtcctggcttgtcaaagtt
ccacctgatgaggatcagctgcgagccagacagatctcagcacagcagattaacaagctt
gaagaattgtggaaggataatcccgaagccaagttagaagatttggataaaccaggagtt
gacgatgaaccacaacaagttcttctcaggtatgaggatgcttaccagtatcaaaacatc
tttggcccactggttaaactggaagcagattatgacaagaagctgaaagagtctcagact
caagataacattgttgttcgctgggatattggtctcaacaagaaaaggattgcatacttc
tcctttcccaagacaaatgacgatatgagactgatgcctggagatgaactccgcctgcga
tatgttggggaattacacaaaccttggcagggtgttggtcatgtgatcaaggtgccaaac
aactttggtgaagaggtggggattgagttgcgcagcaatctgggtgcaccagtggaatgt
actcataactttgttgtggactttgtgtggaaatcaacttcttttgacagaatgcagaca
ggaatgaagacctttgctgtggatgagacatctgtcagtggctacatctatcataagctg
ctgggacatgaggttgaggaacaggttgtcaaatgtacactgcctaagaggttttcagcc
caaggtctgccagagctgaaccattcacaggtgtatgctgttaagactgtcctgcaaaga
ccacttagtcttatgcagggacctccaggtactggtaaaacagtcacatcagccagtgtt
gtctatcacctagccaagcaaaacaatggtcaagttcttgtctgtgctccaagtaacatt
gcagtggaccaattgacagagaagatccataagacaggactcaaggttgtcagactgtgt
gccaagagtagagaggctattgactctcctgtggcattccttgcactgcacaatcaagtg
cgcaacatggacagtgttcctgaactccaaaagctgcagcagctcaaagatgagcagggc
gaactgtctgccgctgatgagaagaggtaccgttctctgaagagaaactgcgaacgtgag
cttctccagcatgcagatgtaatttgtaccacttgtgttggtgctggtgatcctcgtctg
tccaagtttagattccgaactgtgctgatcgacgagtcaacccaagctactgaacctgag
tgtatggtgccagttgtacttggctgcaaacagctgatccttgttggtgatcactgtcag
cttggtcctgttgtgatgtgcaagaaagcagctaatgctggtctgtctcagtctttgttt
gaacgtctggtggttcttgggatccgtcctattcgactacaagtccagtatcgtatgcac
ccttccctgagcgagttcccatccaatctattctatgacggaactcttcagaatggagtc
actgttgctgaacgccagcagactggtattgacttcccctggcctgttcctgataagcca
atgttcttttatgccaccatgggtcaggaggaaatcgcttcctctggaacatcttacctc
aacaggactgaagctgcaaatgtcgagaagattgccactcgattcctccgtgctggagtg
aaaccagaacagattggagtgataactccgtatgagggtcaaagagcttatattgtacag
tacatgcagttcagtggctctcttcatgctaatctttacctggaaatcgaggtagccagt
gtcgatgcatttcagggcagagaaaaggactacatcatcctgtcctgtgttcgctccaac
gaacaccagggaattggtttcttgaatgatccgagacgtctgaacgtggctctgacccga
gcaaaatatggtatcattgttattggcaaccccaagatcttgtccaggcaacccttgtgg
aaccatcttttgaactactacaaagaaaacaaggctttgatggagggacccttgaacaat
ttgaaggaaagcatgatccagtttagcaagccaaggaaacttgttaaccgtactaatccg
ggcggccgtttcatgagcagcaccatgttcgacgcccgtgaagcgctgatccgcggtagt
gtgtatgaccgtcagatacctcaggcacctatggatcctgcagccttccacgacacatac
ttccacactcatgaccggctcagttacatcggagccgagcgaaccattccacctgctgct
gctgcaaggatcccggtacccgtgggaatgtttattcctccggtacctccccctcatcac
tcctactttgggcagcctcttgccggtcgaatgcctcatggccgaccagttcagcagcct
cggcagcgaaatcagcgcaatcaccatcaccaacaaccaatggcgtatgctcctcacatg
ccagccagccaggccagtcaggatgcttcccagcctctgtcccagggcccactcactcag
ggtggcatgtccatgagtcagcccatggcctcgcagccattgtcgcagccggacctgtct
caagatagttaccttggagacgacttcaacctgaaatcccaggctgacgctgtgttgtca
caggattctacctaccaaggagagagaggaggctacatgaactccttaccagactactcc
caaccaaactatgcctcccagtactga
DBGET
integrated database retrieval system
