Stylophora pistillata (Smooth Cauliflower Coral): 111321703
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Entry
111321703 CDS
T05774
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spis03041
]
111321703
Enzymes [BR:
spis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111321703
Spliceosome [BR:
spis03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111321703
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
Ank
AAA_22
nSTAND3
ATPase
Ank_5
Cas3-like_C_2
Sigma54_activat
TsaE
PhoH
Ank_4
T2SSE
AAA_16
Sigma54_activ_2
AAA_7
AAA_23
AAA_29
FtsK_SpoIIIE
AAA_30
Motif
Other DBs
NCBI-GeneID:
111321703
NCBI-ProteinID:
XP_022780399
LinkDB
All DBs
Position
Unknown
AA seq
1638 aa
AA seq
DB search
MAATGSSKTKRGQREICVKEEFKIAVKIALDRFRFEEKQKVLEFPSSFTSVERAYVHRLC
QNLGLKSKSNGNGSNRFLTVSKKMVSAATCSTVLKLTSSASHHIEHLLKKYPLNIKERQE
LQPKTERSTVTFDTGRVGRENRVVGKLNNNTAAVPPVVKENDFFSFRKSLPVFELQEQIM
KLISENQVVLISGETGSGKTTQVPQFILEEACAHSTPCRVVCTQPRRISALSVSERVANE
RGERLGQTVGYQIRLDNRISPKTLLTYCTTGVLLRTLMSGDNSLSFITHVIVDEVHERDR
FSDFLLIALRDLLTVNRRLKLILMSAALDINLFIDYFGKCPVIHVPGRCFDVQAYFLEDV
LKMTSYCNKEMAKHLKHNQIKNVTGEKHGNMSLPTKQEISNAVNDEEVEGSHKDNETEGE
TNVSTEELGPICADIEAEGMFGEELQPLEDVELEDDSVQKLDKDSRDKDYLPEFQLDEEL
GDGDMEEGILLEEEEGVNEANDDEDDEEGDDVDIEEIEDKVDDGDIKELDEAVEEIKLQE
DNCDNALQGLANDENDNQDEESDSEEQYLRQEMDDSISQAWLNGDEDSFVQILYLIMHEN
ISVDYQHSDTQATALMVASGRGCAGVVEQLLGLGANPHIKEPKKGWTAIDWAKKWEHSDV
VKILESSLSSPKVPYVEETALERESKELSEESKELLGIYHKTFDDDRVDLDLITCLLTHI
CNTQQEGSILVFLPGYDEIITLRDNLTADREFGNIXRYQIYILHSSMQPSEQREVFRKLH
QSTRKIILSTNIAETSVTIDDVVFVIDSGKVKEKSFDALTSVSSLQSVWVSKASAIQRKG
RAGRCSPGICYHLFSRVRHDSFLEYQIPELLRIPLQELCLHTKLLASPNTSISDFLSKAP
EAPPALVLRNAVALLKTIDALDQWEDLTDLGRHLADLPLSPQLGKMILYSVVLKCVDPVV
TIACALAYRDPFILPMYPSEKKAAATARKRFVLDPFSDHLVFVQAFRGWQRARSEGDDIK
FCRRNYLSQATLEIMAGMRAQVLGQLKFAGFIRPRGAGDIRDLNSNSNNWAVVKAALCAG
TFPQVARVDRSAKKLTTQKESKVRFHNSSILYQSPTNGDSMFTAQTKAINKLPSDWIIYE
EMSRLYTTVTVKCCTLVSPVTIALFTGPSLSSEHVTQDPSAARDSERYLGDGRVQESESS
DSETEETSGRKEKNSALFNVDEWIALSASQEVVNHVSYLHHKLQALFIRRIRSPSRPWSQ
VDEMVVRAVAAVLTAEEQAMNPSLHPRQRRTRPGFESGSDSRSPRPRSGEQFSPSRDRPR
DSSGSSPRVKSEIPSSSLSGNKVSNDSWSPRASQQSEKSSEARYFIMKCNNQRNLDISMA
KGIWATTLANEKKLNKAFKESKHVMLVFSVQGSGHFQGYAQMTSPIGKDKSPEFGSSSLS
GVFSVEWMKKASIPFQQAHHLVNPWNDHKKVQISRDGQELEPKIGEELCMLWDADQSGGN
GRTPRSTNNTSRRGKPSGPAQGDPHAATGQWQGAQYTAMQQVYATHTPSMPIPVPIPSAH
SRHTIAAPYPRPQVVAAQPMAVHPHPTVPFGAHAMALQSQFRPTAAPRFPGAVVQAPHIR
TMGAPPRASRGSYHSPRK
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactggttcatctaagactaaaaggggtcagagagaaatttgtgtgaaggaa
gagtttaagatcgcggtgaaaattgcccttgatagattccgatttgaagagaaacaaaaa
gtcctggagtttccttcatcatttacatcagtggagagagcctatgtgcacaggttgtgt
cagaatttgggtttaaaatcaaaaagcaacggcaatggaagcaatagatttctaacagtg
tcaaagaaaatggttagtgctgcaacctgtagcactgttttgaaactcaccagcagtgct
tcacatcatattgaacatttactcaagaaatatcctttgaacattaaagagagacaggaa
ctacagcccaaaaccgaaaggtccacagttacctttgatacaggacgtgttggaagagaa
aatagagttgttggcaaactaaacaacaacacagctgcagtgccaccagtagtgaaagag
aatgatttcttttcattccgcaagtctctaccagtttttgagcttcaggaacagatcatg
aagcttatatctgaaaaccaggttgttcttatatctggtgaaacaggttcaggaaaaaca
acacaggttccacagtttatactggaagaggcttgtgctcattcaactccttgccgagtt
gtttgcactcagcctcgacgcatatcagctttgtcagtgagtgaaagagttgctaatgaa
agaggagaaagacttggacagactgttggttaccaaattaggctggataatagaatatct
ccaaagactttgttaacatattgtactactggtgtgctgttacggactttgatgtctgga
gataattcactatcatttatcacccatgtcatagtggatgaggttcatgagcgagataga
ttttcagacttcctgctaatagctttgagggaccttttaacagtaaacagaagactgaag
ttaattttaatgagtgctgctttagatatcaacttgtttattgactactttggaaaatgt
ccagttattcatgttcctggtcggtgctttgatgttcaagcatatttcttggaagatgtt
cttaaaatgacatcatactgtaacaaagaaatggcaaaacatttgaagcacaaccaaatc
aaaaatgttacaggagaaaagcatggcaacatgtccctgcctaccaagcaggaaatttca
aatgcagtaaatgatgaggaagttgagggttctcacaaagataatgagactgaaggtgaa
actaatgtcagcacagaagagctgggtcctatttgtgctgacatagaggcagaagggatg
tttggtgaagaactgcagccattagaagatgtggaacttgaagatgattctgttcaaaaa
ctagacaaagattctcgggacaaagactatcttcctgaattccagcttgatgaagaactt
ggtgatggagacatggaagagggcatcttactggaagaagaggaaggtgtaaatgaagca
aatgatgatgaagatgacgaggagggagatgatgtagatattgaggagattgaggataaa
gttgatgatggagatataaaagagttggatgaagctgtggaagaaatcaaactacaagag
gataattgtgataatgccttgcaaggtctggcaaatgatgaaaatgataaccaagatgag
gagagtgacagtgaggaacagtatttaaggcaagaaatggatgacagtatttcacaggca
tggctaaatggtgatgaggactcatttgtccagattctttacttgatcatgcatgaaaac
atcagcgttgactatcaacactcagacactcaggccactgccctgatggtagcatcaggt
cgaggctgtgcgggtgtggttgaacagttgctgggtttaggagccaatcctcacatcaaa
gaacccaagaagggctggactgcaatagattgggccaagaaatgggaacacagtgatgtt
gtcaaaattcttgaatcgtctttgtcatcgcctaaagttccatatgtggaagaaacagct
ttagaaagggaatctaaggaattaagtgaagaaagcaaagaacttcttggtatttaccac
aagacatttgatgatgatcgggttgaccttgacttaatcacgtgtttactgacacatatc
tgcaacacccagcaagaaggttccatattggtattccttcctggttatgatgaaattatc
actctccgtgacaatttgacagctgatagggaatttggaaatatctgaaggtatcagatt
tatatcctacattcttccatgcaaccctcagaacaaagagaggttttcagaaaactgcat
caatctacgagaaagattattctttcaacaaatatagcagagaccagtgtcaccatcgat
gatgttgtgtttgtgattgacagtggaaaggtgaaagagaaatcttttgatgcactgaca
tcagtttcttcacttcaatcggtatgggtgtccaaagcaagtgcaattcagaggaaggga
agggctgggagatgttcccctggtatttgttaccatttgttcagccgagttcgacatgat
agcttcttagaataccagatcccagaattattaagaatacctctgcaggaattatgtctt
cacacaaaactgttagcatcaccaaacacatcaataagtgatttcttgtctaaagctccc
gaggctccccctgctttggttcttagaaatgctgttgcccttcttaagactatagacgct
ttggatcaatgggaagacttgactgacctcggtcgtcaccttgctgacctacccctcagt
ccacagctggggaagatgatcctgtattcagttgtgctgaagtgtgtggatccagtggtg
accatcgcctgtgcccttgcctacagggatcctttcatccttcccatgtacccgtcagaa
aagaaagcagcagctacagccaggaaaagattcgtcttagatccattcagcgatcacttg
gtgtttgtgcaagcgttcagaggctggcaacgagctcgatctgaaggtgacgacataaaa
ttctgtcggaggaactacttgtctcaagctaccttggaaattatggctggtatgagagca
caggttcttggacaattgaaatttgccggttttattcgccctcgtggagcaggagacatc
agggacttgaattccaactcaaacaactgggctgttgtcaaggcggccctctgtgctgga
acatttccgcaggtggcccgggtggatagaagcgcaaaaaaactcacaacacagaaagag
agtaaagttcgatttcacaattcctccatattgtaccagtctccaacaaacggagactcc
atgttcaccgctcaaactaaggccatcaacaaacttccctctgattggataatttacgaa
gaaatgtcaaggttgtacacaacagtgaccgttaaatgctgcacactggtgtcccctgta
acaatagcactctttactggaccaagcctgtcttccgagcatgttacccaggacccctct
gctgcacgtgacagtgagaggtaccttggagatggacgagtgcaagagagtgaaagcagt
gatagcgaaacagaggaaacatcaggaaggaaagaaaaaaatagtgctctgtttaacgtg
gatgagtggattgcgctgtctgctagtcaagaggttgtaaaccacgtttcatatttgcat
cacaagttacaagcgctgtttattcgaaggattcgttcaccttccagaccatggtcacaa
gtggacgagatggttgtccgtgcagtagctgcagttttaacagctgaagaacaagccatg
aatccttcactgcatcctcgtcaaagacgaacacgaccaggatttgaaagtggatctgac
tcaagatccccaaggcctcgctcgggtgagcagttctccccgtccagagatcgcccacgt
gattcctctggatcaagtccacgcgtaaaaagtgagataccgtcctcctcactgagcgga
aacaaagtttcaaatgatagttggtccccaagggcttctcagcagtctgagaaatcaagt
gaagctcgatactttatcatgaagtgcaacaaccagagaaatttggatatatcgatggct
aagggcatctgggcaacaacattggccaatgaaaagaaactgaacaaagctttcaaggaa
tccaagcatgttatgctggtcttctcagtgcaaggaagtggccactttcaaggttacgca
cagatgacgtcacccattggcaaagacaagtccccagagttcggttcaagttcgctgagc
ggtgtgtttagtgtcgaatggatgaaaaaagccagtattccattccaacaagctcaccac
cttgtcaacccgtggaatgatcacaaaaaggttcagattagtcgggatggacaggagctg
gaacctaaaataggcgaagagctctgcatgctatgggacgctgaccaatctggcgggaac
ggacgaaccccgagatctacaaacaacacgagtagacgtggcaagccttctggacccgcc
caaggcgatccccacgctgccactggtcagtggcagggtgcacagtacactgctatgcaa
caagtgtacgctacccacaccccctccatgccaattcctgttcccattccttccgcgcac
tcccgacataccatcgctgcaccgtatcctcgacctcaagttgtggcagcccagcctatg
gctgttcacccccatcccaccgtccctttcggtgctcacgcaatggcactgcagtctcag
ttccgtccaacagcggctccaaggtttcctggagcagttgttcaggcgccccacataagg
acaatgggtgcaccaccacgtgcatcaagaggctcgtatcattctccgagaaagtga
DBGET
integrated database retrieval system
