Stylophora pistillata (Smooth Cauliflower Coral): 111322440
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Entry
111322440 CDS
T05774
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spis03016
]
111322440
Enzymes [BR:
spis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111322440
Transfer RNA biogenesis [BR:
spis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111322440
Prokaryotic type
tRNA splicing ligases
111322440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
111322440
NCBI-ProteinID:
XP_022781274
LinkDB
All DBs
Position
Unknown
AA seq
410 aa
AA seq
DB search
MAKEHRTFKEECSYIERLNGNSFLIRKGFVPNMKVEGIFYINDLLEKLMFDELKHWAGTQ
GIGGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMSLPEAVVSPGGVG
FDINCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALSMGMD
WSLREGYAWAEDKEHCEEYGRMLQADPGKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEI
YNNYAAKKMGVDHPGQVCVMIHSGSRGLGHQVATDALVEMERAMKRDKIEVNDRQLACAR
INSQEGEDYLKGMAAAANYAWVNRSTMTFLTRQAFGKVFKSTPDDLDMQVIYDVSHNIAK
IEEHILDGAQKTLLVHRKGSTRAFPPHHPLIPVDYQVGFSLFTAPIDRKL
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagaacaccgtacattcaaagaggagtgctcttatattgagcgcttaaacgga
aactcgtttcttataagaaaaggctttgtcccaaatatgaaggttgaaggtatcttctat
ataaatgatttacttgaaaagctgatgtttgatgagctgaaacactgggctggaactcaa
ggtattggtggtttccttcctggtgtaaagcagattgcaaatgttgcagctttacctgga
attgttggtaaatcagttggactaccagatgttcattccggctatgggtttgctataggg
aatatggcagcatttgacatgtctcttccagaagcagttgtttctcctggtggtgttggc
tttgatatcaactgtggagtgcgactgctgaggacaaaccttgatgaaagggacgttcag
cctgtcaaagaacaattagctcagtcacttttcgatcatatccctgttggtgttggctca
aaaggtgttattcccatgggtgcaaaagatctggaggaagctctctcaatggggatggat
tggtccttaagagaaggctatgcatgggctgaggataaggagcactgtgaagagtatgga
cgaatgctgcaggctgacccaggaaaagtcagtgcaagagcaaagaaacgaggcttgcca
cagcttggcacacttggagccgggaatcactacgcagaaatccaggtggtggatgaaata
tacaacaactatgcggcaaagaagatgggagtcgatcatcctggacaggtttgtgtgatg
atccacagtggcagcagaggacttggacatcaagtggccactgatgcactggtagaaatg
gagagggccatgaaaagggacaagattgaagtcaacgacagacagcttgcttgtgccaga
attaactcacaagaaggtgaagattacctcaaaggcatggctgcagcagcgaattacgct
tgggtgaatcgttcaacgatgacatttttgacaagacaagctttcggaaaagttttcaag
agtaccccagacgacttagacatgcaagtgatctatgacgtgtcacacaacattgcaaag
atcgaggaacatatattagacggtgcgcagaagactctgttagtgcacaggaaaggatca
acgcgtgcatttcctccgcatcatccgcttatcccagtggattaccaggtcggcttttca
ctttttactgctcctatcgatcgtaagctttaa
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