Stylophora pistillata (Smooth Cauliflower Coral): 111333346
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Entry
111333346 CDS
T05774
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03008
Ribosome biogenesis in eukaryotes
spis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111333346
09123 Folding, sorting and degradation
03018 RNA degradation
111333346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spis03021
]
111333346
03019 Messenger RNA biogenesis [BR:
spis03019
]
111333346
03009 Ribosome biogenesis [BR:
spis03009
]
111333346
03016 Transfer RNA biogenesis [BR:
spis03016
]
111333346
Transcription machinery [BR:
spis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111333346
Messenger RNA biogenesis [BR:
spis03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111333346
Ribosome biogenesis [BR:
spis03009
]
Eukaryotic type
Pre-60S particles
RNases
111333346
Transfer RNA biogenesis [BR:
spis03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111333346
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
111333346
NCBI-ProteinID:
XP_022794628
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MGVPAFFRWLSKKYPSIVVHCVEEKGPEVDGVRAPVDTSLPNPNDYEFDNLYLDMNGIIH
PCCHPENKPAPKNEDEMMVAIFEYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETKEKAEEMARIRSELMEKGALLPPEKEKTEHFDSNCITPGTEFMANLSICLRYYIA
DRLNNDPGWKNIKVILSDANVPGEGEHKIMDYIRKQRASPHHDPNTKHCLNGADADLIML
GLATHELHFTIIREEFKPNQKRPCEMCGQIGKNYFKVLLFFDELPAPVAQEVEFIFIRLN
VLREYLERELRMEGLPFPYSFERCLDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVGIY
KRVLPRCGGYLAKHGIVDLSRVQMILQELGYVEDEIFKKRQENEVQYRKRLKANKEREKR
QKMRDAPLWTPSGQFSPHAITKTPSAIVSPRQEAYAMRKQAMSYSGSSTEAANKSAAANL
RAMLVTPSPDANTSSSSTPNSNPASNKRKHEDEDEEPKDDIRLWEAGWKGRYYKNKFQLS
EDDEGYDDFRKKVAHAYVEGLCWVLLYYYQGCPSWKWFYPYHYAPFASDFRDLASLPNSF
EKGTQPFKPLEQLMGVFPAASGNFLPPTWRELMSHPESPIIDFYPLDFEIDLNGKKYAWQ
GVALLPFVDEKRLLGALSHVYPDLTELETKRNNRGKDRLFLRQGNPVFDFFVGLYEGGGI
RESVEIVANLSGGMSGKVEPDDVPILPHKIVHDTTLYLVAKPLNKSEVKSGLRCRSVLVN
FTIRRKVFVVALSSSTLPPSSSSFSRFTNSRPQTVINFIQLNKTLRDNVCFNCILVDFSV
LFTDPVYDDDHIFKADVLPEAVPPARVLKPEGYDRNAPYRPVTGMNPNRTSFAQIDGAGR
RMLNFHGGEVFRFSTPRSHAPPFRSHSGPPQNYPRHGHPPHSRSILGTPPSSRDYNDPRR
NNHYSQQVPRHNSGSYQGNRPTPWSQRLPSYRGPGPNQPQFSRNHSNNPSRDPRQHQDSR
GYSAPARDDRRQSYPLSNYRYRP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattttttcgttggctatcgaagaaatacccgtcgatcgttgtccac
tgtgtcgaagagaaaggacctgaagttgatggagtgagagcccctgtggacacaagttta
cctaaccccaatgactatgaatttgataacctatacctggacatgaatggaatcattcat
ccttgctgccatccagaaaacaagccagctccaaagaatgaagatgaaatgatggtggct
atttttgagtacatcgacagaatcttctctattgtcagacccagaaagttactttacatg
gccattgatggagtggctccaagagcaaaaatgaaccagcaaagatctcgtcgatttaga
gcatctaaagaaaccaaggaaaaagccgaggaaatggcaagaattagaagtgaattgatg
gaaaaaggagctcttttaccaccagaaaaagaaaaaactgaacactttgacagtaactgt
atcacaccagggacagagttcatggcaaacttgtctatatgtttaagatattacattgct
gacagattaaacaatgatcctggatggaagaatataaaagtgatattatcagatgctaat
gttcctggagagggtgagcataagataatggactacatcagaaagcaaagagcaagtcca
catcatgacccaaacacaaagcactgtttgaatggtgctgatgctgatctgatcatgctg
ggacttgcaactcatgagcttcacttcacaattatcagggaagagtttaaaccaaaccaa
aagagaccatgtgagatgtgtggtcaaattggtaagaattactttaaagtcctgcttttt
tttgatgagctccccgcacctgtggcccaagaagtagagtttattttcatcaggctaaac
gttttacgagagtacctcgagcgtgagttaagaatggaaggccttcctttcccgtatagc
tttgagcgctgtcttgatgactgggtattcatgtgcttctttgtaggaaatgatttcctt
ccccatttgccgtcgttagaaatcagggaaggagctatagaccgtttggtgggaatttac
aagagggtactaccaagatgtgggggctacttggctaaacatggaattgtggaccttagc
agagtacagatgattcttcaagagcttggttatgtggaagatgaaatctttaagaagaga
caggaaaacgaagtacaatatagaaaacgtctgaaggcaaataaagagagagaaaaacga
caaaagatgcgggatgctcccctctggacaccaagtggacaatttagccctcacgccata
actaaaacaccctcagctattgtctcccctcggcaagaggcttatgccatgcgaaagcaa
gcaatgtcctacagtggcagcagtacagaagcagccaataagagtgctgcagcaaatctt
agagctatgcttgtgacgccttcccctgatgctaatacgtcttcttcaagtacaccaaac
tcgaatccagcatcaaacaagagaaaacatgaagacgaggacgaggaaccgaaagatgat
attcggttatgggaggcaggatggaaaggccgttattacaaaaataaatttcaactgtct
gaagacgatgaaggttatgatgacttcaggaagaaagtggcacacgcctatgtggaagga
ctttgttgggttttactttattactatcagggttgtccttcttggaagtggttttatcca
tatcattacgctcctttcgcctcagatttccgtgaccttgcatcacttccaaactctttt
gaaaaaggaacacaaccgtttaagcctttagagcaactgatgggagtattcccagcagcc
agtggaaactttcttcctccaacctggagagagctgatgtctcacccagagtcgccgatt
attgatttctacccgctggattttgaaatcgatctcaacgggaagaagtacgcatggcaa
ggcgtagccctcttaccgtttgtagacgagaagagacttctcggtgctctcagtcatgta
tacccggatctcacagaattggagacgaaaagaaacaatcgcggtaaagatcgcttgttt
ctacgccaaggaaatcctgtctttgacttctttgtgggcctttatgaaggaggtggcatc
agagagtcggttgaaatcgtagcaaatctgagtggtggcatgtcaggaaaagtagaacca
gatgatgttcctattttacctcacaaaatagtccatgatacaactctgtacttagttgcc
aagcctttgaacaagagtgaggttaagagtggtcttcgttgtcgctctgtccttgtcaat
tttactattcgtcgtaaggtcttcgttgtagctctgtcctcgtcaacattaccaccctct
tcatcgtcgttttctcgctttacgaacagcagaccacaaaccgtaatcaattttatacaa
ctgaataaaactttgcgtgataacgtatgttttaattgtattcttgttgattttagtgtc
ctgttcactgatcctgtttacgacgacgatcatatttttaaagcagatgttttacccgag
gcagtacctccagcccgtgttctgaaaccagagggttatgacagaaatgctccatatcgg
cccgtcacaggaatgaatcctaacaggacctcgttcgctcaaattgacggcgctggaaga
agaatgctcaacttccatggcggtgaagtctttcgtttctccacaccccgcagccacgct
cctcccttccggtcacactcaggccctccgcagaactacccgagacacggtcaccctccc
cattcaagatccattctgggcactcctccttcgtcacgtgattacaatgatccaagacga
aacaaccattacagtcagcaggtgccgcgtcacaactcaggcagttaccaaggaaacagg
cctacgccttggtcgcaaaggctaccctcttatcggggaccggggccgaatcaaccccag
ttctcgcgcaatcattctaacaacccgtcacgtgatccgcggcaacatcaagacagtcga
ggctatagtgcaccagccagggatgatcgtcgccagtcctacccgctctccaattaccgc
tacagaccttag
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integrated database retrieval system
