Stylophora pistillata (Smooth Cauliflower Coral): 111339443
Help
Entry
111339443 CDS
T05774
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111339443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spis03019
]
111339443
03041 Spliceosome [BR:
spis03041
]
111339443
Messenger RNA biogenesis [BR:
spis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111339443
Spliceosome [BR:
spis03041
]
Complex B
Other components
Prp19-related factors
111339443
Complex C
111339443
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_15
TPR_2
TPR_8
Mad3_BUB1_I
RPN7
TPR_7
ARM_TT21_C
ARM_TT21
PPR
DHR-2_Lobe_A
DUF6440
Motif
Other DBs
NCBI-GeneID:
111339443
NCBI-ProteinID:
XP_022801834
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MPVTSSNLIIEEEDLPYEEEIIRSPYSVKFWIRYIEHKAKKGSNTALNLLYERALKELPG
SYKIWYLYLKERRRQVRGRPITDPVYEDINNAFERSLVFMHKMPRIWIDYCQFLVDQCKV
TRTRHTFDRALRALPITQHRRIWPLYLKFVRKYHIPETAVRVYRRYLKLEPENTEDYIDY
LKSVGWLDEAATRLAFIVNKEKFVSKEGKSNHKLWQELCDLISKNPDKIKSLKVTDIIRG
GLRRFSDSLGQLWNSLADFFIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFEESM
ISAKMETTAEMGPNEEDDIDLELRMARFEHLMDRRPLLLSSVLLRQNPHNVHEWHKRVKL
YEGKPKEIINTYTEAVQTVEPKLASGKPHTLWVEFAKFYEQHGQLAEARVIFDKATKVNY
RKVDDLASVWCEFSEMEIRHENYQQALNLMRRATAMPSTKTDYYDESETVQKRVYKSLKL
WSMYADLEESLGTFQSTKAVYNRILDLRIATPQIIINFATFLEEHRYFEEAFKVYERGVS
MFKWPNVFDIWNTYLTKFIQRYGGAKLERARDLFEQVLEGCPAKFAKSFYLLYAKLEEDH
GLARHAMSIYERSTKAVLPEEQFEMFNLYIKQAAEIFGVTHTREIYEKAIEVLPDEQARE
MCIRFADLERKLGEIDRARAIYMHSSQMADPRTTPTFWKVWHDFEVRHGNEDTFREMLRI
KRSVQAQFNTQVNFMSAQMLAAAASKSAGAGTEEPVSDDMQLLEQQALAVAAAKAKTDVA
AKLKEKVLFVRGETSQGDNENNEPVTNPEEIDIDDDDDDDDDDEAEKEDEEEIQVEEQLV
PSKVFGGLKRDDD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgccggtaacatccagtaaccttatcattgaagaagaggacctgccctatgaggaggaa
atcattcgaagtccctattctgtaaaattctggatcagatacatagagcataaggccaaa
aaaggctccaacacagcactgaatctgctttatgagcgagctcttaaggagcttcctgga
agctacaagatctggtatctgtatttgaaagaaagaagaagacaagtgaggggaagacct
atcacagatcctgtttatgaagacataaacaatgcatttgaaagatctcttgtcttcatg
cataagatgccaaggatctggatagactactgtcagtttttagtggatcagtgtaaagtg
acaagaacaaggcacacatttgacagagcattgagggcactgccaataacgcagcaccgt
cgcatctggcctttataccttaagtttgttcgcaagtaccacattccggaaactgcagtc
agagtctaccgaagatacctgaagttggagccagaaaacacagaagattacattgattat
ttgaagtctgttggatggctggatgaagcagcaacacggcttgctttcattgttaacaag
gagaaatttgtgtccaaggaaggaaaatcaaaccacaagctctggcaagaactttgcgac
cttatttccaagaaccctgataagataaagagtctcaaagttactgacattattcgtgga
ggtttgcgccgattttctgacagcttgggacagctttggaattcactggctgactttttt
atcagaagtggacactttgaaaaggcccgagatgtttatgaagaggctattcaaacagtt
atgactgtgcgagactttggacaggtatttgatgcctatgcacagtttgaagaaagtatg
atcagtgctaagatggaaacaacagcagagatgggtcctaatgaagaagatgatattgac
ttggagcttagaatggcaagatttgaacatttaatggacagaaggcctctcttactgagc
agtgtccttttacgtcaaaaccctcacaatgtccatgagtggcacaaaagagttaaactg
tacgagggaaaacccaaagagatcatcaacacgtacacagaggccgtacagacagttgag
ccaaagctcgcatctggcaaaccccacaccctgtgggtagagtttgctaagttctacgag
cagcatggtcagctggctgaggcgcgagttatatttgacaaagctactaaagtgaattac
cgcaaagtggatgatttggcgagtgtgtggtgtgaatttagtgagatggaaatcagacat
gaaaattatcaacaagcccttaatctgatgagacgagccacagctatgccttcaaccaaa
actgattactatgatgagagtgaaactgttcaaaaacgagtttacaagtcgctgaagttg
tggtccatgtatgccgacttggaggagagcctgggcacatttcagtccaccaaagctgtg
tataatcgcattctggatctgcggatagcaactccgcagattatcataaactttgctacg
tttctggaagaacatcgctactttgaagaagctttcaaggtctatgagcgtggagtgtca
atgttcaagtggcccaatgtgtttgatatctggaatacctacctaacaaagtttattcaa
agatatggtggcgcaaaactcgagcgtgcacgagacctctttgagcaagtcctggagggc
tgtcctgccaaattcgctaaatctttctatttactgtacgctaaactcgaagaggatcat
ggtcttgcccgtcacgctatgtcgatctacgagagatctacgaaagcagtgttgccggag
gagcaatttgagatgttcaacttgtatatcaagcaagctgcggagattttcggtgtcacc
cacacgcgtgaaatctacgagaaagccattgaagtgctacccgacgaacaagcaagggag
atgtgtatcagatttgctgaccttgagcgcaaactgggagaaattgaccgagccagagct
atttacatgcactcttcgcaaatggctgatccaaggaccactccaactttctggaaagtg
tggcatgacttcgaggtccgacatggaaacgaggatacgttccgagaaatgttacgtatc
aagaggagcgtgcaggctcagtttaacacgcaggtcaatttcatgtctgcacaaatgttg
gcagcggctgctagcaaatctgcaggagcaggaactgaagagcctgtgtccgatgacatg
cagctactagaacagcaggctcttgctgtggcagcagctaaggctaagacagacgtagcc
gccaagttgaaggagaaagtcttgtttgtcaggggtgaaacaagtcagggtgataatgaa
aataatgaaccagttactaaccccgaagagatcgacattgatgatgatgatgatgatgat
gatgacgacgaagctgagaaggaagatgaagaggaaattcaagtcgaagagcagttggtt
ccgagcaaggtgtttggcggattaaaacgcgatgacgactga
DBGET
integrated database retrieval system
