Stylophora pistillata (Smooth Cauliflower Coral): 111343497
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Entry
111343497 CDS
T05774
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit-like isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03022
Basal transcription factors
spis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111343497
09124 Replication and repair
03420 Nucleotide excision repair
111343497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spis03021
]
111343497
03036 Chromosome and associated proteins [BR:
spis03036
]
111343497
03400 DNA repair and recombination proteins [BR:
spis03400
]
111343497
Enzymes [BR:
spis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111343497
Transcription machinery [BR:
spis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111343497
Chromosome and associated proteins [BR:
spis03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111343497
DNA repair and recombination proteins [BR:
spis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111343497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
Histone_HNS
nSTAND3
AAA_11
Motif
Other DBs
NCBI-GeneID:
111343497
NCBI-ProteinID:
XP_022806418
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEHYSYMMELKRTLDAKGHCLLEMPSGTGKTISLLSLIVAYI
LAKPFELSKLIYCSRTVPELEKVLEELKVLLEYYEKETGRKPKLLGLGLSSRKNLCIHPE
VSAEREGKKVDGKCMNLTASYIRLRHKEDNTVPVCALYEAFDEHGKEEKISPGVYNLGDL
KEFGRKKGWCPYYLARYTIYHANIVVYSYHYLLDPKIAELVSKELEKTSVVVFDEAHNID
NVCIESLSVTISRRTLDRSHANVENLTRTVKNLKQKDATKLREEYSRLVQGLRDASVARE
TDVVLANPVLPDEVLEEAVPGNIRQAEHFVNFMRRFIEYLKTRLRTQHVVQESPPSFLQH
IFQQVCIERKPLRFCAERLSSLLYTLELPDVQDYGPLTLIANFATLVSTYSKGLTLIIEP
FDDRTPTIPNPILHFSCMDASIAIKPVFDRFQSVVITSGTLSPIDMYPKILDFRPVTMAT
FTMTLARICLCPMIVGRGNDQVAITTKFETRDDMSVIRNYGNLLAEMSAVVPDGIVCFFV
SYQYMEAVVSIWNDQGIISNIQRNKLLFIETQDAAETSLALHNYQRACENGRGAILLSVA
RGKVSEGIDFDHHYGRAVIMFGIPYVYTQSRILKARLEYLRDQFNIGENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFFKVDKRGKLPKWIQEYLKEGVCNLSIDEAVQISKRF
LRQMAQPFDQEDQLGLSLLTVEQVQSEEFQKRILQSAVA
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaaacatagacggcctcctggtgtactttccttacgactatatctatcctgaa
cattattcgtacatgatggaattgaaaagaactcttgatgctaagggtcactgccttttg
gaaatgccttctggaactgggaaaactatctcattgctgtccttgatagttgcatatatt
ttggccaaaccatttgagctgtccaaactgatctactgctctcgtactgttccagaatta
gaaaaagttctagaagagttgaaggttcttttggagtattatgaaaaagaaacaggaaga
aaacccaaattgcttgggctgggactcagctcaagaaagaatctttgcattcatcctgag
gtgagtgcagaaagagaagggaagaaagtagatgggaaatgtatgaatttgactgcgtca
tatatacgtctaagacacaaagaagacaacactgttcctgtttgtgcactttatgaggct
tttgacgaacatggtaaagaggaaaaaatttcccctggggtatataatttgggtgacttg
aaagaatttggaaggaagaaaggatggtgtccatattatttggcaagatatacaatatat
catgcaaacatagtggtctacagctatcactacttgctggatcctaaaattgctgaactt
gtttcaaaagaactggaaaaaacatcagttgtagtctttgatgaggctcataatattgat
aatgtatgcattgaatccttgagtgtaacaatttcaagaagaacacttgatagaagtcat
gctaatgtggaaaacttaactaggactgttaaaaatctgaaacagaaagatgccacaaaa
ctgagggaggagtacagccgtcttgttcaaggtttacgggatgcaagtgttgcaagagaa
actgatgtggtattggctaatccagttttaccagatgaagtcctggaagaggcagtacct
ggaaatattagacaagctgaacattttgtaaattttatgagaaggtttattgagtattta
aagaccaggctaagaacacagcatgttgtacaagaaagtcctccatctttcctgcagcat
attttccaacaagtctgtattgaaagaaaacctctcagattttgtgcagagcggttgagt
tctctgctatacacgctagaactccctgatgttcaagactatggtcctttaacattgatt
gccaactttgctactctagtcagtacctacagcaaagggttaacactgatcattgagcca
tttgatgatcgcacaccaaccatacccaatccaatcctgcatttcagctgtatggatgct
tccattgctataaaacctgtttttgacagatttcagtccgtggttatcacatcagggact
ttgtcacccatagacatgtatcccaagattcttgacttcaggccggtgaccatggcaact
ttcaccatgacacttgccagaatttgtttgtgtcccatgattgttggcaggggaaacgat
caagtagccattacgactaaatttgaaacaagagatgatatgtctgtcattcgtaactat
ggcaacctcttagctgagatgtcagccgtggtgcccgatgggattgtttgctttttcgtc
agctatcagtacatggaagcagtggtgtccatttggaatgatcaaggtataatcagcaac
attcagagaaataaactgctcttcattgaaactcaagacgcagcagaaactagtttagcc
cttcataattaccagcgggcttgtgaaaatggaagaggtgccattttactttcagttgcc
agaggaaaagtttcagaaggaattgattttgaccatcactatggtagggccgttattatg
tttggaattccatatgtctatactcaaagtaggatcctaaaggcccgccttgagtacctc
agagaccagtttaacatcggagaaaatgatttccttactttcgatgcaatgagacatgct
gctcagtgtgttggccgtgctatcagaggaaaaacagactacggaatcatggtgtttgct
gataagagattcttcaaagttgacaaaaggggcaaacttcccaagtggattcaggagtac
ttgaaagaaggagtgtgcaacctgtctattgatgaagcagttcagatcagtaagagattc
ttgaggcagatggcgcaaccgtttgaccaggaggatcagcttggcctctcacttcttact
gttgagcaggtgcaatctgaggagtttcaaaaaagaatcctacagtcagccgtggcatga
DBGET
integrated database retrieval system
