Stylophora pistillata (Smooth Cauliflower Coral): 111345222
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Entry
111345222 CDS
T05774
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
spis
Stylophora pistillata (Smooth Cauliflower Coral)
Pathway
spis03013
Nucleocytoplasmic transport
spis03015
mRNA surveillance pathway
spis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111345222
09122 Translation
03013 Nucleocytoplasmic transport
111345222
03015 mRNA surveillance pathway
111345222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spis03019
]
111345222
03041 Spliceosome [BR:
spis03041
]
111345222
Enzymes [BR:
spis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111345222
Messenger RNA biogenesis [BR:
spis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111345222
Spliceosome [BR:
spis03041
]
Complex C
Other components
EJC/TREX
111345222
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111345222
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Cas3-like_C_2
AAA_19
ApbA
Motif
Other DBs
NCBI-GeneID:
111345222
NCBI-ProteinID:
XP_022808234
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAEVNDENELLDYEEEETETPAEAQATEDLAKKGVKGTYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILSMDIICQAKSGMGKTAVFVLATLQQLEQIDGQVSVLVMC
HTRELAFQISKEYERFSKYMNNIKVSVFFGGISIKKDQQTLKTNCPHIVVGTPGRILALA
REKSLNLKHIKHFILDECDKMLEQLDMRRDVQEVFRMTPHEKQVMMFSATLAKEIRPVCK
KFMQDPMEVYVDDETKLTLHGLQQYYVKLKDQEKNRKLFDLLDVLEFNQVIIFVKSVQRC
IALAQLLIEQNFPAICIHRGMEQEERLSRYKQFKDFSKRMLVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEKDAKILNEVQDRFEVNVGELPEEIDL
STYIEQVR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagttaatgatgaaaacgaattgttggactacgaagaggaggaaacagaaacc
ccagcggaggcgcaggcgaccgaggatctcgcaaagaaaggagtgaagggtacctatgtt
agtatccacagttctggcttcagagatttcctcttgaaaccagaacttcttcgagccatc
gttgactgtggattcgaacatccttcagaagttcagcatgagtgtattcctcaagcaatc
ctgagcatggatattatctgtcaggccaaaagtggaatggggaaaactgcagtctttgtt
ctggcaacacttcagcagctagagcaaattgatggccaagtcagtgtgttggttatgtgc
cacacacgagagttggctttccagatctctaaagagtatgaaaggttttctaaatacatg
aataacatcaaagtttcagtgttttttggtggcatcagcatcaagaaggaccagcagacc
ttgaagaccaactgcccgcatattgtagtgggtaccccaggcagaatattggcgctggca
cgagagaagtcattgaatctcaagcatatcaagcactttatccttgatgagtgtgacaag
atgttagaacagcttgatatgcgaagagatgtgcaagaagtattccgcatgactccacat
gagaaacaagtcatgatgttcagtgcaactttagccaaagagatccgccctgtctgcaag
aagtttatgcaagatccaatggaagtttatgttgatgatgagacaaagctcaccttgcac
ggtctgcaacagtattatgtcaaactcaaagatcaggagaagaacagaaagcttttcgac
ctcttagatgtgttagaattcaaccaggtaatcatctttgtcaagtcagtacagcgctgt
attgcccttgctcagttgctgatcgagcagaacttcccagcaatttgtatccacagagga
atggaacaagaagagagattgtcacgctacaaacagttcaaagatttctccaagagaatg
ctggtagccaccaatctgtttggtcgtggaatggatatcgaaagagtcaacattgtgttt
aactatgacatgccagaggattcagacacctaccttcacagggttgccagagctggacgt
tttggcacgaaaggccttgccataacctttgtctcagacgaaaaagatgctaagatattg
aatgaagtccaagatcgctttgaagtgaatgtaggagaactcccggaggagattgacctt
tcaacatacattgaacaagtacgttaa
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