Spiribacter curvatus: SPICUR_00455
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Entry
SPICUR_00455 CDS
T02888
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spiu
Spiribacter curvatus
Pathway
spiu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPICUR_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spiu03021
]
SPICUR_00455
Transcription machinery [BR:
spiu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPICUR_00455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
E2R135
FCaBP_EF-hand
DUF4611
Motif
Other DBs
NCBI-ProteinID:
AGY91119
UniProt:
U5T0U9
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All DBs
Position
complement(92510..94366)
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AA seq
618 aa
AA seq
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MASQDQQSQIRELIARGKEQGYLTYAEVNDHLPDDIVEPDQIEDIISMINDMGIPVHETA
PDADTLMLSDSAVSTDEDEAEEAAAALAAVDAEFGRTTDPVRMYMREMGTVELLTREGEI
ELAKRIEDGLDQVLRALSGYPESSRTMVALHRGIQNGELRLAEVVAGFRNITELVDNVPE
VVARHQAQADEAAREAEAREAEADEEDEVPAAETGPDPERAAEIFDRIEILHAELVELLE
QSGPDSPRVGEIRDEMTGLFLAIKFVPKVIDGLAANLRKAVEGVRAGEREVMRVATKQGG
MPRKDFIASFPGHETDTGWVDKVAAQGKKYSSQIAQCRDALVEQQSELIRIRELTGLPPA
EIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGR
EPYPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSVMSPVDSAT
REGLRESVREILGGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPTRSDNLRGFLDEQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcaagccaggatcagcaatcccagatcagagaactcattgcccgtggcaaggagcag
ggatacctcacttacgccgaggtcaacgatcatctacccgacgatatcgtcgagccggat
cagatcgaagacatcatcagcatgatcaacgacatggggatcccggtccatgagaccgcg
ccggatgccgacaccctcatgctcagtgacagcgccgtgtcgaccgacgaggatgaggcc
gaggaagccgcggcggccctggcggcggtggatgccgagttcggtcggaccaccgacccg
gtgcggatgtacatgcgcgagatggggactgtcgagctcctcacccgcgagggcgagatc
gaactcgccaagcgtattgaggacggcctcgatcaggtactgcgggcattgtccggatat
ccggagtcgtcgcgcaccatggtcgccctgcacaggggcatccagaatggcgagctgcgg
cttgccgaggtcgtcgccggctttcgtaacatcaccgagctcgtcgacaacgtccccgag
gttgtcgcgcggcatcaggcacaggccgacgaggcggcgcgcgaagccgaggcccgcgaa
gcagaggccgacgaggaagatgaggtgccggcggccgagacggggcccgatcccgagcgc
gcggcggagatcttcgatcgcatcgagatcctccatgccgagctggtcgagctcctcgag
cagtccggccccgatagcccgcgggtcggcgagatccgggacgagatgaccgggttgttc
ctcgccatcaagttcgtgcccaaggtcatcgatgggctggcagccaacctgcgcaaggcg
gtcgaaggcgtgcgcgccggcgagcgcgaggtcatgcgcgtggccaccaagcagggcggt
atgccgcgcaaggacttcatcgccagcttcccgggacacgagaccgataccggctgggtt
gacaaggtcgccgcccagggtaagaagtacagcagccagatcgcccagtgccgggacgcg
ctggtcgaacagcagtccgagctgatccggatccgcgagctcaccggcctgccgccggcc
gagatcaaggagatcaaccggcggatgtcgatcggcgaggcccgggcgcgccgcgccaag
aaggaaatggtcgaggccaacctgcggctggtcatctccatcgccaagaagtacaccaac
cgcggcctgcagttcctggatctgatccaggagggcaacatcgggctcatgaaggcggtg
gacaagttcgagtaccgtcgcggttacaagttctcgacctatgccacctggtggatccgc
caggccatcacccgctcgatcgccgaccaggcgcggaccatccgtatcccggtccacatg
atcgagaccatcaacaagctcaaccgcgtatcgcggcagatgctccaggagatgggccgc
gaaccctaccccgaggagcttgccgagcgcatggagatgcccgaggacaaggtccgcaag
gtgctcaagatcgccaaggagccgatctcgatggagacgccgatcggcgacgacgaggac
tcgcacctcggcgacttcatcgaggatacgtcggtcatgtcaccggtggactcggccacg
cgcgaggggctgcgcgagtcggtgcgggagatactgggtggactcacgccgagggaggcg
aaggtcctgcggatgcgcttcgggatcgacatgaataccgaccataccctcgaggaggtc
ggcaagcagttcgatgtcacccgtgagcgtatccgccagatcgaagccaaggcgctgcgc
aaactgcgccacccgacccgttcggacaacctgcgcgggttcctcgacgagcagtag
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