Spiribacter curvatus: SPICUR_02520
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Entry
SPICUR_02520 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPICUR_02520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiu03019
]
SPICUR_02520
Enzymes [BR:
spiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPICUR_02520
Messenger RNA biogenesis [BR:
spiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPICUR_02520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ERCC3_RAD25_C
OrgA_MxiK
Motif
Other DBs
NCBI-ProteinID:
AGY91517
UniProt:
U5T5Q8
LinkDB
All DBs
Position
complement(508131..509441)
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AA seq
436 aa
AA seq
DB search
MEQNHLSDTTFESLGLHESLLTGLKEAGFEYCMPIQAAALPIALQGRDVAGQAQTGTGKS
AAFLLATMNWLMSHPVAADRIGPWAIIIAPTRELALQIHKDAEKLGWFTGMDFACIYGGT
GYESQRKALERGTDIIIGTPGRVIDFYKQGVFSLDNIEVCVLDEADRMFDMGFIADIRYL
LRRMPAPDQRLNMLFSATLSERVRELAYEHMNEPESVQIESDTITADRVRQTLYHVENDQ
KIGLLIGVLREQAPTRTLLFVNTKRDADKVAAYLIGNDIKAAVISGDIPQNKREQLLEKF
QGGDLPILVATDVAARGLHIPEVSHVINYDLPQDAEDYVHRIGRTARAGAAGDAISFACE
TYVYSLPDIEGYIDQKIPAEMAPAELIVEDLKPAARTNNRRSGNGANRSRSGGNGGRRSG
GSRKRNDSAPSDGDQS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaatcatctctctgacacgactttcgagtcccttggactccacgaatccctg
ctcacgggcctgaaagaggccggcttcgagtactgcatgccgatccaggcggccgccctg
ccgatcgcgctgcagggtcgcgatgtcgccggtcaggcccagacgggcaccggcaaatcg
gcagcattcctgctggccaccatgaactggttgatgtcgcatccggtcgccgccgacagg
atcggtccctgggcgatcatcatcgccccgacccgcgaactggcgctgcagatccacaag
gatgcggaaaagctcggctggttcactggcatggacttcgcctgtatttacggcggcacg
ggttatgagagccagcgcaaggcgctggagcgcggcactgatatcatcatcggtacgccg
ggtcgggtcatcgatttctacaagcagggcgtgttcagcctcgataacatcgaggtctgc
gtgctcgatgaggccgaccgcatgttcgacatgggcttcatcgccgacatccgctacctg
ctgcggcgcatgccagcgccggaccagcgcctcaatatgctgttctcggcaacgctctcc
gagcgggtccgcgagctcgcttacgagcacatgaacgagcccgagtcggtccagatcgaa
tccgacacgatcaccgccgaccgcgtccgccagaccctctatcatgtcgagaacgatcag
aagatcggtctgctgatcggtgtcctgcgcgagcaggcaccgacccggacgctgctgttc
gtcaacaccaagcgtgacgccgacaaggtggccgcctatctgatcggtaacgacatcaag
gcggcggtcatttccggtgatatcccgcagaacaagcgcgagcagttgctggagaaattc
caggggggcgacctgccaatcctcgtcgccactgatgtagcggcccgtggcctgcatatc
cccgaggtcagtcacgtcatcaactacgacctgccccaggatgcagaggactatgtccac
cgcatcggccggacggcccgggccggcgctgccggggatgcgatcagcttcgcctgcgag
acctatgtctactcgctgccggatatcgagggctacatcgaccagaaaatccccgcggaa
atggcgcctgccgagctcatcgtcgaggacctcaaacccgcggcacggacgaacaatcgc
cgcagtggcaacggcgcaaaccgcagccgctcgggcgggaatggcggacgccggagcggc
ggcagtcgcaagcgcaatgactcagcgccctccgacggcgatcagtcgtag
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