Spiribacter curvatus: SPICUR_02890
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Entry
SPICUR_02890 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPICUR_02890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiu03019
]
SPICUR_02890
Enzymes [BR:
spiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPICUR_02890
Messenger RNA biogenesis [BR:
spiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPICUR_02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
UvrD-helicase
P-loop_SecA
AAA_11
AAA_22
Cas3-like_C_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
AGY91584
UniProt:
U5T239
LinkDB
All DBs
Position
complement(577634..578758)
Genome browser
AA seq
374 aa
AA seq
DB search
MTFDDFGLQTELLDAVKASGYNTPTSIQQQAIPEILNGKDLLGAAQTGTGKTAAFTLPLL
QRLAARRPEAKRRPVRLLVIAPTRELAAQIHESIKKYGANLPLRSGVVFGGVGMQPQIDR
LRKGVDILIATPGRLLDHLQRDNLRLDQVESVVLDEADRMLDMGFIHDIRKVMKKVPASR
QTLLFSATFSKEIRQLASGMQTNPVEIDVAPHNSAADTVEQSVYRLEKAEKRPMLSRLIR
EGGWQQVLVFTRTKHGANNLSKQLDKDGLSTAAIHGNKSQTARTKALDGFKKGHVRVLVA
TDIAARGLDIDQLPHVVNFDLPHVAEDYVHRIGRTGRAGNSGEAISLVAPDEGKLLKGIE
RLLKRPLKRADTAA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatgatttcggtcttcagaccgaactgctcgacgccgtcaaggcctcgggc
tacaacacccccacctcgatccagcaacaggccatcccggaaattctcaacggcaaggat
ctgctcggcgccgctcagaccggtaccggcaagaccgcggccttcaccctgccccttctg
cagcgcctcgccgcgcgccggccggaggcgaaacgccgcccggtccgattgctagtgatc
gccccgacgcgggaactggcagcgcagatccacgaaagtatcaagaagtacggtgccaac
ctgccactccgctccggcgtggttttcggtggcgtcggcatgcagcctcagatagatcgc
ctgcgcaagggcgtggatatcctgatcgccacacccggacgtctgctcgaccacctgcag
cgtgacaatctgcgcctcgaccaggttgagagcgtggtcctggatgaggcggaccgaatg
ctcgacatgggcttcatccacgacatccgcaaggtgatgaaaaaggtcccggccagccgg
cagacgctgctgttctcggcgaccttttcgaaagagatccgccagttggcctcgggcatg
cagaccaatccggtggaaatcgatgtcgccccgcacaacagcgccgccgacaccgtggaa
cagtccgtctatcggctcgagaaagccgaaaagcgcccgatgctgagccgtctgatccgc
gagggtggctggcagcaggtgctggtgtttacgcgcaccaagcacggtgccaacaacctc
agcaagcagctcgataaggatggactgagcaccgccgcgattcatggcaataagagccag
acggcgcgcaccaaggcgctggacgggttcaagaagggtcacgtgagggttctggtggcc
actgacattgccgctcgcgggctcgacatcgaccagctgccccatgtggtcaactttgac
ctgccgcatgtggccgaggactacgtccatcgcattggccgcactggtcgtgccggcaat
tccggcgaagcgatttcgctggtggcgccggacgagggcaaactgctgaaagggattgag
cgcctgctcaagcgcccgctcaaacgcgctgacacggctgcatag
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