Spiribacter curvatus: SPICUR_04640
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Entry
SPICUR_04640 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPICUR_04640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiu03019
]
SPICUR_04640
03009 Ribosome biogenesis [BR:
spiu03009
]
SPICUR_04640
Enzymes [BR:
spiu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SPICUR_04640
Messenger RNA biogenesis [BR:
spiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPICUR_04640
Ribosome biogenesis [BR:
spiu03009
]
Prokaryotic type
rRNA processing factors
SPICUR_04640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
AGY91907
UniProt:
U5T6R4
LinkDB
All DBs
Position
927690..930404
Genome browser
AA seq
904 aa
AA seq
DB search
MLVNATQPEELRVALVDGQSLYDLDIETPARERKKANIYKGRITRVEPSLEAAFVQYGAE
RHGFLPFKEIAREYFDGDGDIDPDNASIADVITEGREVVVQVEKEERGTKGAALTTFVSL
AGRYLVLMPNNPRAGGVSRRIEGNERNEIRDALKTLEVPDGMGLIVRTAGVGRNAEELQW
DLDYLRNLWSAVQKAAETKSAPFLIYQESNVIIRALRDYLRADIGEILIDDREVYERARE
FVEQVMPHNLQKLKFYDDKVPLFNRYQIESQIESAFQREVRLPSGGVIVIDHTEALVSID
INSARATKGADIEETALKTNVEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQREVENRV
RDAVKQDRARVQLGRISRFGLLEMSRQRLRSSLGESALEVCSRCSGQGTVRSVESLALSV
LRIIEEEAMKDKTGKVVAQLPVDVATFLLNEKRGILETIETRNGIGVILIPNRSLETPHY
ELQRVRSDEETEPANSYQMGTEEAAPSRAEELLTAERPQAERPAVSGVSAGRPAPAPSQP
PVSATTPAPTPEAETPAETDRGVPRAPGLIGWLKRLVSGDDDATRDSPMHSSTTRTASDA
GTGTADHDSTEASSTRSRSGNGRRRRSGNGNAGQANRRGGQRRNRAANADESEAGPDAAP
SNESADPIGESEQKKSKPKSAGKKKDSDAESKPKAKRSGGSKSSDKDKDKDKDKDKDKDK
EKNKGKTQAREQAAPEPKPADETSPTASGATAGVVESADDRDEANGESAGNGNRSRRGRR
GGRRRRRGGSSGNGSDDNGAEQALDSESASADPAPADVRQPSEPEPESKPEPEPKSEPKS
EPQSGSADELAQDKPKRRRSRSGSGRPRKAETTAETPASAGPAAPAGDPRRWSGRPRLPS
ETGD
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtcaatgcaacccagcccgaagagctgcgggttgcactggtcgatggccagtcc
ctctacgacctcgacatcgagacaccggcacgggagcgtaagaaagccaatatctacaag
gggcggatcacccgggtcgagccgagtctcgaagcggcgttcgttcagtatggcgccgag
cggcacggctttctgccgttcaaggagatcgcccgcgaatactttgatggcgatggggat
atcgaccccgacaatgcctcgattgcggatgtcatcaccgaggggcgtgaagtcgtcgtc
caggtcgaaaaggaagagcgcgggaccaagggcgcggcactgaccacattcgtcagcctt
gccggccgctatcttgtgctcatgcccaacaacccgcgggctggcggtgtttcacggcgg
attgagggtaatgagcgcaatgagatccgtgatgcgctgaaaaccctcgaggtgccggac
ggcatggggttgattgttcgcacagccggggtcggacgtaacgccgaagaactgcagtgg
gacctcgattacctgcgcaatctctggtcagcggtgcagaaggcggcggagaccaaatcg
gccccctttctgatctatcaggagagcaacgtcatcatccgcgccctccgggattatctg
cgcgcggacatcggcgaaattctcattgatgaccgcgaggtctacgagcgggcgcgggag
ttcgtcgagcaggttatgccccacaacctgcagaagctcaagttctacgacgacaaggtc
ccgctgttcaatcgctaccagattgagagccagatcgagtcggccttccagcgggaggtc
cggctgcccagcggcggcgtgatcgtgatcgaccacaccgaggcgctggtctccatcgac
atcaactcggcccgagcgaccaaaggcgccgacatcgaagagacggccctcaaaaccaac
gtcgaagccgccgacgagatcgcccgccaactgcggctgcgtgacctcggcgggctgatc
gtgatcgacttcatcgacatggggcccaatcggaatcagcgcgaggtggaaaaccgcgtg
cgcgatgccgtgaagcaggatcgcgcacgcgtccagctgggtcgcatctcacgctttggc
ctgctggagatgtcccgccagcgtctacgctcctcactgggcgaatcggcgctcgaggtc
tgcagccggtgcagcggtcagggcaccgtgcgcagtgtcgaatcactcgccctgtcagtg
ctccggatcatcgaagaagaggcgatgaaggataagacgggcaaggtggtcgcacagctg
cctgtggacgtcgcaacgttcctgctcaatgagaaacgcggcatcctcgaaaccatcgag
acgcgtaacggcatcggagtgatcctgatccccaatcgcagcctggagacgccgcattac
gagctccagcgggtgcgcagcgatgaggagacggaacccgccaacagttatcagatgggg
acagaggaagccgccccgagtcgcgccgaggaactactgacggcggaacgaccacaggcc
gaacggccagccgttagtggcgtgagtgccggccgccccgccccagcccccagtcagccg
ccggtatcagcaacgacgcccgcgccgacgcctgaagcggagacaccggccgagacggat
cggggtgtgccccgggctcccgggctgattggctggctcaagcgcctggtcagcggcgat
gacgatgcaacacgcgactcgccaatgcattcgtcgacgacccggacggcgtcggacgcg
ggtaccggcacggccgatcatgactcgaccgaggcctcctcgacgcgatcgcgcagtggt
aacggccgccgccggcgcagcgggaatggcaacgccggccaggccaatcgccgtggcgga
cagcgccgcaaccgcgccgccaatgccgacgagagcgaggctgggcccgatgcggcgccg
agtaatgaatcggccgaccctatcggtgagagcgagcagaagaagagcaagcccaagtcg
gcggggaagaaaaaggattccgacgcggagagcaagcccaaggcgaagcgtagcggcggt
tcgaagtcgtcagacaaagacaaagacaaagacaaagacaaggataaggacaaggacaaa
gagaagaacaaggggaagacacaagccagggagcaggcagccccagagccaaagcctgct
gatgagaccagcccgacggctagcggtgcgactgccggggtcgtcgagtctgccgatgat
cgggacgaggcaaacggcgagagcgccggtaatggcaaccgcagccgacggggtcgtcgg
ggcggtcgtcgtcggcggcgcggcggtagcagcggtaacggcagtgacgacaatggcgca
gagcaggcactggattcggagtccgcgtccgccgatccggcgccggcggacgtcaggcag
ccgtccgagccggagccagagtcgaagccggagccggagccaaagtcggagccaaagtcg
gagccgcagtcagggtcagcggacgagctggcgcaggataagcccaagcggcgtcgctcc
cggtcaggcagcggccgtccccgcaaggcagagacaaccgccgagacaccggcgagtgcc
gggccggcagcgccggcgggagatccgcgccgctggtcgggtcgcccgcgtctgccctca
gagacgggcgattag
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