Spiribacter curvatus: SPICUR_05840
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Entry
SPICUR_05840 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SPICUR_05840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spiu03400
]
SPICUR_05840
Enzymes [BR:
spiu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SPICUR_05840
DNA repair and recombination proteins [BR:
spiu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SPICUR_05840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGY92141
UniProt:
U5T4E9
LinkDB
All DBs
Position
1167265..1170972
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AA seq
1235 aa
AA seq
DB search
MSDPQPLDVLATPLNGQQLIEASAGTGKTFTLAALYLRLVLGHDPTDPERRPMLPPEILV
MTFTRDATRELRDRIRARLAEAARCFVGARDPDPDDSILTGLLDAYPDTETRQRHADHLR
AAADWMDEAAIYTIHSFCHRMLQQHAFDAGNPFALELSDDEGLITREAIEDYWRETIYPL
SDDALAALGATLSGRGDGAKPSIKRFAHTLKPLLASSEQLGVDASQPPGPVIERQAARQA
QAIESLRTAVHADLEGFDEALAEAWASKRLAASKNPVPKTWMNALRPALEAWRRNPAQRL
PEIDPAKIARATLEKGVTKGNTLPEALAEHPIALAADELGEAQAALAETAGPFYAHAAQW
VARRIVATRRQRGVIGFNDMLTRLRDALRQPEAGERLASVIRYQFPVALVDEFQDTDPIQ
YRILQAIYPPDADAGLVLIGDPKQAIYSFRGADLATYLQAAWRIPETRRYTLARNFRSAR
SMVDAVNTLFGQSPLGSEPFQPDAIDFQRVSANGRSETLSIDGQPAPGMTLWQLQAGDEA
PEGLPMADYRRQMATIGARRIRRLLDQAQEGKAGFGNGADQRPVRPADIAILVRTGEEAG
LIRAALREHGLASVYLSDRDNVLQTVEAGDVLRWLQAMAEPESERRVRTAVGTASLAYDW
ATLDGLFSDDARWEAVLEQFRDYADRWRRRGVLPALRQLIHDHALAHRLLMRPGGERALS
NLLQISELLQETAATLDGPAGLVRWLDEEMQREGDTPADDRILRLESDAALIKVITIHKS
KGLEYPLVFLPFICSYRPARAAPPLIRENGDDSVIAFKATEADTQAARDRQQAEDMRLLY
VAVTRAVHACWLGLAPIRQAGKTKGSGIHLQESAIGRLIGCPSDATAADLGPLLTALANR
SPAIIREPVERPTPSDGTARVATTPPAMAVARTYTARAPGAERWWIASYSALLEDGPRAA
IPGTAQADILAEESQQTTQAPAARSETATDALHAIPAGPATGTLIHYLLEALANRQFPAS
DETVFRQIVERGLRGQRWRDWAPLLRDWLATLVETPLPLPNATPIRLNALPGDAFIAELE
FLISVGRVRASRIDAIIRRYTLDGASRPGLGESDLNGMVKGYIDLVIRHEGRYWVIDYKS
NALGPSNMHYDSATLRQAVMDKRYDAQYALYLLALHRLLRARLGPDYDYDTHVGGAVCFF
LRGIGHSGGGLHAERPDRALVEELDALFSEEVDHA
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgatccgcaaccgcttgacgtgctggccaccccactcaacgggcagcagctcatt
gaggcgagtgccggcaccgggaagaccttcaccctcgcggcgctctatctacgcctcgtc
cttggccatgatcccactgacccagagcggcggccgatgctcccgcccgagatcctggtg
atgacgtttacgcgcgatgccacccgggaactccgcgaccggattcgggcgcgccttgcc
gaggcggcgcgctgcttcgtcggtgcccgcgatcccgatcctgatgattccatcctgacc
ggactgctggatgcctatcctgacaccgagacgaggcagcgccacgccgatcatcttcgc
gcggcggcggactggatggacgaggcggcgatctacaccatccacagcttctgccaccgc
atgctccagcagcatgcgtttgacgccggcaaccctttcgccctcgagctcagcgatgat
gagggcctgatcacccgcgaggcgattgaagactactggcgagagacgatttacccactc
agtgacgacgcgctggcggcgctgggggcgacgctgagcggcaggggggatggagcgaag
ccctcaatcaagcgtttcgcccacaccctcaagcccctgctcgccagcagtgagcaactg
ggcgtcgacgcctcacagccccccggcccggtcatcgagcgccaggcggcacggcaggca
caggcgatcgagtcactacgaaccgccgtccacgccgatcttgagggctttgacgaggcg
ctcgccgaggcctgggcgagcaaacgtctcgccgccagcaaaaaccctgtccctaaaacc
tggatgaacgccctcaggcccgctctcgaggcatggcggcgcaatccggcccagcgactg
cccgagatcgatccggccaagatcgcgcgcgcgacgctcgaaaaaggcgtcacgaaaggc
aatacattgccggaggcgctggccgaacaccccatcgcgctggccgctgacgagctgggc
gaagcacaggcggcactggccgaaaccgccggtccgttctacgcgcatgccgcgcagtgg
gtcgcacggcggattgtggcgacacggcgtcagcgcggcgtcatcgggttcaacgatatg
ctcacccggctgcgcgatgcgctccggcaacccgaagccggcgagcgcctggcctcggtc
atccgttatcagttcccagtggcgctggtggatgaattccaggacaccgacccgatccag
taccgaatcctgcaggccatctacccgccggatgccgacgcgggtctggtcctgattggc
gatccgaagcaggcgatctacagctttcgcggtgcagacctcgcgacctatctgcaggcg
gcgtggcgcattcccgagacccggcgttatacccttgcccgcaacttccgctccgcgagg
agcatggtcgatgcggtcaatacgctattcgggcaatccccgctgggttccgagccattc
cagcctgatgccatcgacttccagcgggtcagcgcgaacggccgcagcgagacactgtcc
atcgacggccaaccggcaccggggatgacgctctggcagctgcaggccggcgacgaggcg
cccgagggtctgcccatggccgactaccgccgacagatggcgaccatcggcgcacggcga
atccgtcggctcctcgatcaggcgcaggagggtaaggccgggttcggcaatggcgccgat
cagcgaccggtccgtccagcggatatcgccatccttgtgcgcaccggcgaggaggccggg
ctcattcgcgcggcactgcgcgagcacgggttggcctcggtctatctatcggatcgggac
aacgtcctacagaccgtcgaggccggtgacgtgcttcgttggctacaggccatggccgag
ccggaatcggagcgtcgcgtgcggaccgcggtgggcaccgccagcctcgcctatgactgg
gccaccctggatgggcttttcagcgacgacgcgcgctgggaggccgtcctcgagcagttc
cgcgactacgccgatcgctggcggcgccgcggcgtcctgcccgccctgcgccagctcatt
catgaccatgcgctcgcgcatcgactcctcatgcgccccggcggagaacgggcactgagc
aacctgttgcagatcagtgagctcctgcaggagaccgccgctacgctggacgggccggcg
ggtctggtgcgctggctcgatgaggaaatgcagcgcgagggagataccccggccgacgac
cgtatcctgcgcctggaaagcgatgcagcgctgatcaaggtgatcaccatccacaaatcc
aagggcctcgaatacccactggtttttctgccgttcatctgcagctatcgccccgcgagg
gctgctcccccgctgatccgcgagaacggtgacgactcggtcatcgccttcaaggcaacc
gaggcagacacgcaagccgcacgtgaccgccagcaggcggaagacatgcgcctgctctac
gtcgccgtcacccgcgcggtgcatgcctgctggctgggtcttgcaccgatccggcaggct
gggaaaaccaagggatcggggattcacttgcaggaatccgcgattggccgattgatcggc
tgcccgagcgatgcgaccgcggccgatctgggtccacttctcacggcgctcgccaatcgc
agtccggcgatcatccgcgagccggtcgagcgccccaccccatcggatggcacggcacgg
gttgccaccacgccgcccgcgatggccgttgcccggacctacaccgcccgggcgcctggc
gcagagcgctggtggatcgcaagctatagcgccctcctcgaggatggaccgcgtgccgct
atccccggtacggcacaggccgacatccttgccgaggagagtcaacagacaacccaggca
ccggccgcgcgcagcgagacggccaccgacgcgctgcatgccatccccgccggtcccgcg
acgggcaccctcatccattacctgctcgaggcactcgccaaccgtcagttcccggcgagt
gatgagacggttttcaggcagatcgtcgagcgcggcctacgtgggcagcgctggcgcgac
tgggctccgctcctgcgtgactggctggcaaccctcgtcgagacgccactgcccctgccg
aacgccacacccatacggctcaacgcgctgccgggggacgcgttcattgccgagcttgaa
ttcctgatttcagtgggccgcgtccgggcgagtcgcatcgatgccattatccgccgctac
acccttgacggcgcgagtcggccgggcctgggcgaaagcgacctcaacgggatggtgaaa
ggctatatcgacctggtcatccgccatgaaggccggtactgggtgatcgactacaaatcc
aatgccctcggtccgtccaacatgcactacgactccgcaacgctccggcaagcggttatg
gacaaacgctatgacgcccagtacgccctctacctgctcgccctccatcgtttgctgcgt
gcccgtctagggccggattacgactacgacacccatgtcggtggcgcggtctgctttttc
ctgcgtgggatcggccatagcggcggcggcctccatgccgagcgtcctgaccgcgcgctg
gtggaggagctggatgcccttttcagcgaggaagtcgatcatgcctga
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