Spiribacter curvatus: SPICUR_06725
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Entry
SPICUR_06725 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPICUR_06725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiu03019
]
SPICUR_06725
03400 DNA repair and recombination proteins [BR:
spiu03400
]
SPICUR_06725
Enzymes [BR:
spiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPICUR_06725
Messenger RNA biogenesis [BR:
spiu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPICUR_06725
DNA repair and recombination proteins [BR:
spiu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPICUR_06725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGY92309
UniProt:
U5T448
LinkDB
All DBs
Position
1362362..1364197
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AA seq
611 aa
AA seq
DB search
MHDAMSSKPSVSAGHVLEAVFGYSHFRGRQAEVIEHVIGGGDALVLMPTGGGKSLCYQIP
ALVRSGVAVVVSPLIALMTDQVTALRQQGVRAAALNSSLPTEERAETEHALRTGDIDLLY
IAPERLLNSDLMQRLAGIDVALFAIDEAHCVSQWGHDFRPEYLQLGVIAERFPDVPRIAL
TATADQRTREEIRDRLLPSDAASFVSSFDRPNIRYQVGLKERPREQLLQFIRDRHAGESG
IVYCMSRRATEQIADWLNTRGVPALAYHAGLESTLRAHHQARFLREEGLVMVATVAFGMG
IDKPDVRFVAHLDLPKTLEAYYQETGRAGRDGLPAEAWLVYGLQDIYRIRQMGAESQAGE
GHKRREQHRLEALLGFCETSECRRPTLLAHFGESYAGHCGHCDNCQSPPRTWDAADPARR
LLSCVYRTGQRFGAAHVIDVLLGQDNERIRQRGHHRLSTFGIGKDLARATWQSVTRQLLA
RGYLEPDPDGHGGLRLNDACRPLLRGECGLSLREDLPARRSEPRTRVAAADVAMAPDTWA
ALRAQRRRLADTEGVPPYVIFHDATLLAMVEQQPSNLEEFAALPGVGARKLERYAEAFLD
TLAALPDSSMR
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgatgtccagcaaacccagcgtttccgccggccatgtcctcgaggcggtc
ttcggttattcgcatttccgcggccgtcaggccgaggtcatcgagcacgtgatcggcggc
ggcgacgcccttgtgctcatgcccaccggtggtggcaagtcgctctgctaccagattccg
gcactggtccggtccggtgtcgccgtcgtcgtctcgccgctgattgccctgatgaccgat
caggtcacagcactcagacagcagggcgtcagggccgccgcgctcaactccagcctgccg
acggaggagcgcgcagagaccgagcatgccttgcggaccggcgatatcgatctgctctat
atcgcccccgaacgcctgctcaacagcgatttgatgcaacgcctcgccggcatcgatgtc
gcccttttcgccatcgatgaagcgcattgcgtctcccagtggggtcatgacttccggccc
gagtacctgcagctcggcgtgattgccgagcgctttcccgacgtaccgcggattgctctt
accgccaccgccgatcagcgcacccgcgaggaaatccgtgaccgcctgcttccgagcgat
gccgcgtcgttcgtctcgagcttcgatcgccccaacatccgctatcaggtcggcctcaag
gagcgtccccgggagcagctactgcagttcatccgcgaccgtcatgccggcgaatccggg
atcgtctactgcatgtcgcgccgcgccaccgaacagatcgccgactggctgaacacccgc
ggcgtcccggcactggcctatcatgccggtctggaatcgacgctccgggcccaccaccag
gcccgattcctccgcgaggagggactggtcatggtcgcaaccgtcgccttcggcatgggc
atcgacaagccggacgtgcgctttgtcgcccatctcgatctacccaagaccctcgaggcc
tactatcaggaaaccggtcgcgcgggccgtgacggactgccggccgaggcctggctagtc
tacggtctgcaggacatctaccggattcgccagatgggggccgagtcgcaggccggtgaa
gggcacaaacgccgcgagcagcaccggctcgaggcattgctgggcttctgtgagaccagt
gaatgccgccggcccaccctgctcgcgcatttcggcgagtcctatgcgggccactgcggc
cactgcgacaactgccagtcaccccctcgcacctgggacgccgccgatccggcgcggcgt
ctactgtcctgcgtctatcggaccggtcagcggttcggcgccgcgcatgtgatcgatgtg
ctgctggggcaggacaacgaacgaatccgccagcgcggtcaccatcggctgagcacgttc
ggcatcggtaaagacctggcccgcgccacctggcagtcggtgacccggcaactcctcgcc
cgcggctacctcgaacccgatccggacggccacggcggcctgcgcctcaatgacgcctgc
cggccgctactgcgcggcgagtgcggactctcgctgcgcgaggacctcccggcccgccgg
tccgaaccccgcacccgcgtggccgccgccgatgtggcgatggccccggatacctgggcg
gcgctgcgggcgcagcgacgacgtctcgccgacaccgagggcgtcccgccctatgtcatc
ttccacgatgccactctgctggcgatggtcgagcagcaaccgagcaatctcgaggagttc
gcggcactgcccggcgtcggcgcccgcaaactcgagcgctatgctgaagccttcctcgat
acgctggcggcgttacccgactcgtccatgcgttaa
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