Spiribacter curvatus: SPICUR_08310
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Entry
SPICUR_08310 CDS
T02888
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPICUR_08310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spiu03021
]
SPICUR_08310
03400 DNA repair and recombination proteins [BR:
spiu03400
]
SPICUR_08310
Enzymes [BR:
spiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPICUR_08310
Transcription machinery [BR:
spiu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPICUR_08310
DNA repair and recombination proteins [BR:
spiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPICUR_08310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
gerPA
Topo-V_HhH_2_2nd
Motif
Other DBs
NCBI-ProteinID:
AGY92599
UniProt:
U5T528
LinkDB
All DBs
Position
complement(1668688..1672938)
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDLLNLFKQPGAQLDDFDGIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCA
KIFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPAAHIWFLKS
LPSRIGLLLDMTLRDIERILYFEAFVVIEPNMTPLKKGQLLSDEQYLDAMEQYGDEFDAR
MGAEAVGHLLKNIDLREETDTLREQMDATNSETKIKRLSKRLKLVESFLESGNRPEWMVM
SVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLSAPDIIVRNEKRML
QESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLRLHQCGLPKRMALELFKPFIFSRLQRLGLATTIKAAKKMVERETAEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAVQLHPLVCPAFNADFDGDQMAVHVPLALEAQLE
ARSLMMATNNVLAPASGEPIIGASQDIVLGLYYMSLVLQKQAGEGMTFADLDEVHRAYES
GRVSLQARVTVRIHEVVVDDEGQRTEATRRVDTTAGRALIYNIVPEGLPFDLVDRDMSKK
AISEMIDQCYRRLGLKATVVFADQIMYLGFRMSTRAAVSIGMEDMVVPGEKEQILSDAEV
EVKDIEDQYASGLVTNGERYNKVVDIWSRTNEEVASAMMEKLGKETVTDAEDNEIVQKST
NSIFMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVSQDLVVTSEDCGTHRGLRLTPLIEGGDVVEALGERV
LGRIVAQDVVQPGTGKVLVEQGELIDERRIEVIESEGVDEIWVRSPITCETRHGVCSACY
GRDLARGHRVNVGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVSNVQVKSAGTVR
LHNLKTVAHQSGNLVAVSRSGEITVMDEAGRERERYKVPYGATISVAEEEAVDAGQIVAN
WDPHTHPIVTEVKGRLKFYDFVEGVTVNRETDEVTGLSSLVVTDPKSRGTGEHVRASTNE
KVAYKDLRPVVKLVDEAGNDLNLAGTEIAAHYALPAGAIVSVEDNAEVNVGDVIARIPQE
SSKTRDITGGLPRVADLFEARKPKEPAILAETSGTVSFGKDTKGKQRLVLTTPDGEEHEE
LIPKHRNVTVFEGEFVEKGEVIADGEPNPHDILRLLGVAELAAYMVKEIQDVYRLQGVKI
NDKHIEVISRQMLRKVEIRESGDTRYLRGEQADWGRVEEENEQLIEQGRDPAVWEPQLLG
ITKASLATDSFISAASFQETTRVLTDAATRGARDDLRGLKENVIVGRLIPAGTGYAYHQD
RQRQRRETPAPMIPMAPQFGLGNAAAAPDTSDLSEN
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctactgaatctgttcaaacagccgggcgcccagctcgacgactttgatggc
atccgcattggattggcatcgccggagaagatccggtcgtggtcgtttggcgaggtgaaa
aaaccggaaaccatcaactatcggacgttcaagccggagcgggatggactcttctgcgcg
aagatcttcggccccgtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaag
catcgcggtgtcgtctgcgagaaatgtggcgtcgaggtgacactggccaaggtccgccgc
gagcggatgggccatatcgacctggccagcccggccgcgcatatctggttcctcaagtcg
ctgccctcgcgcatcggcctgttgctggatatgacgctgcgcgatatcgagcggatcctc
tatttcgaggcctttgtggtcatcgagcccaatatgaccccgctcaagaagggccagctg
ctgagcgacgagcagtatctcgatgccatggagcagtatggcgatgagttcgacgcccgc
atgggcgccgaggcggtgggccatctgctcaagaacatcgatctgcgcgaggagaccgac
accctgcgcgagcagatggatgcgaccaactccgagaccaagatcaagcgcctgtcgaag
cgcctcaagctggtcgagtcgttcctcgagtcgggcaaccggccggagtggatggtgatg
tccgtgctgccggtgctgccaccggatctgcggccgctggtgccgctcgatggcgggcgc
ttcgcgacctccgatctcaacgatctctaccgccgggtcatcaaccgcaacaaccgcctg
cgccggctgctggatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctc
caggagtcggtggatgcgctgctcgacaacggccgtcgcggtcgggccatcaccggcacc
aacaagcggccgctgaaatcgctggcggacatgatcaagggcaagcagggccgcttccgg
cagaacctgctgggcaagcgcgtcgactactccggtcgttccgtgatcgtggtcggcccc
accctgcgcctgcaccagtgcgggctgcccaagcgcatggcgctggagctgttcaagccg
ttcatcttctcccgcctgcagcggctggggctcgccaccaccatcaaggcggccaagaag
atggtcgagcgcgagaccgccgaggtctgggacatccttgaggaggtgatccgcgagcac
ccggtgatgctcaaccgggcgccgaccctgcatcgcctgggcatccaggccttcgagccc
gtgctggtcgagggcaaggcggtgcagctgcatccgctggtctgcccggcgttcaatgcc
gactttgacggtgaccagatggcggtccatgtgccgctggcgcttgaggcacagcttgag
gcccggtcgctgatgatggccaccaacaacgtcctcgcgccggcctccggcgagccgatc
atcggcgcgtcgcaggacatcgtgctggggctctattacatgtcgctggtgctgcagaag
caggccggtgagggcatgaccttcgccgatctcgatgaggtccatcgggcctacgaaagt
ggccgggtgagccttcaggcgcgggtcacggtgcgtatccacgaggtggtggtcgatgat
gagggccagcgcaccgaggccacccgccgggtggacaccaccgcgggccgggcgctgatc
tacaacatcgtgcccgagggcctgccgttcgatctggtcgaccgggatatgagcaagaag
gccatctccgagatgatcgaccagtgctaccggcggctgggtctgaaggcgacggtggtc
ttcgccgaccagatcatgtatctcggcttccgtatgtcgacccgcgccgcggtgtccatc
gggatggaggacatggtcgtgccgggggagaaggagcagatcctctccgatgccgaggtc
gaggtgaaggacatcgaggatcagtacgcctcgggtctggtgaccaacggtgagcgctac
aacaaggtggtggacatctggtcgcgcaccaacgaggaagtcgcgagcgcgatgatggaa
aagctcggcaaggagaccgtcaccgacgccgaggacaacgagatcgtgcagaagtcgacc
aactcgatcttcatgatggccgactcgggggcccgtggctcgcccgcgcagatccgccag
ctggcgggcatgcgtggtctgatggccaagcccgatggctcgatcatcgaaacgccgatc
accgcgaacttccgcgaggggctgaacgtcctgcagtacttcatctccacccacggtgcc
cgtaagggcctcgcggacacggcgctgaagaccgccaactcgggctacctgacccgccgg
ctggtggacgtctcccaggatctggtcgtgacctcggaggactgcggcacccaccgcggc
ctgcgtctgacaccgttgatcgagggcggcgacgtggtcgaggccctgggtgagcgggtg
ctgggccggatcgtcgcccaggacgtggtccagccgggcaccggcaaggtgctcgtcgag
cagggtgagctcattgatgagcgccggatcgaggtgatcgagagtgagggtgtggacgag
atctgggtccgctcgccgatcacctgcgagacgcgtcacggcgtctgctccgcctgctat
gggcgtgatctggcgcgcgggcatcgggtcaatgtcggtgagtcggtgggcgtcattgcc
gcgcagtcgatcggcgagcccggcacacagctgaccatgcgcaccttccacatcggcggt
gccgcctcgcgggcggctgcggtcagcaacgtccaggtcaagtccgccggtaccgtgcgg
cttcacaacctcaagacggtcgcgcatcagtccggcaacctcgtggcggtgtcgcgctcc
ggcgagatcacggtcatggatgaggccggccgtgagcgtgagcgctacaaggtgccctat
ggcgccaccatctccgtcgccgaagaggaggcggttgatgcgggccagatcgtcgccaac
tgggatccgcatacccacccgatcgtgaccgaggtgaaggggcggctgaagttctacgac
ttcgtcgagggcgtcaccgtcaaccgggagaccgacgaggtgacggggctgagcagcctg
gtggtgaccgatccgaagagtcgtggcaccggcgagcacgtccgcgccagcaccaacgag
aaggtggcctacaaggacctccgtccggtggtgaaactggtcgacgaggcgggtaacgac
ctcaacctcgcggggaccgagatcgcggcccattacgcgctgcccgccggggcgatcgtg
agcgtcgaggacaacgccgaggtgaatgtgggcgacgtcatcgcccgtatcccgcaggag
tcgtcgaagacccgcgacatcaccggtggtctgccccgtgtggccgacctgttcgaggcc
cgcaagcccaaggagccggccattctcgccgagacctcgggcactgtgagctttggcaag
gacaccaagggcaagcagcggctggtgctcaccacaccggatggtgaggagcatgaggag
ctgatccccaagcaccgcaacgtcacggtgttcgagggtgagtttgttgaaaagggtgag
gtcatcgccgatggcgagcccaacccgcacgacattctccgcctgctgggtgtggccgaa
ctcgccgcctacatggtcaaggagatccaggacgtctaccggctgcagggcgtgaagatc
aacgacaagcacatcgaggtgatcagtcgccagatgctgcgcaaggtcgagatccgcgag
tccggtgacacccggtatctgcgcggcgagcaggcggactggggccgcgtcgaggaagag
aacgaacagctcatcgagcagggccgtgacccggcggtctgggagccccagctgctgggg
atcaccaaggcctcgctggccaccgattcgttcatctccgcggcgtcgttccaggagacc
acgcgggtgctcaccgatgcggccacccgcggggcgcgggacgacctgcggggtctcaag
gagaacgtgatcgtcggtcgtctgatcccggcgggcacgggctatgcgtatcaccaggat
cgtcagcgccagcgtcgcgaaacgccggcaccgatgatccccatggcgccacagttcgga
ttgggtaacgccgcggcggcgcctgacacgagcgacttgtcggaaaactag
DBGET
integrated database retrieval system
