Spiribacter sp. 2438: GJ672_00020
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Entry
GJ672_00020 CDS
T06294
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
spiz
Spiribacter sp. 2438
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spiz03032
]
GJ672_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
spiz03400
]
GJ672_00020 (gyrB)
Enzymes [BR:
spiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
GJ672_00020 (gyrB)
DNA replication proteins [BR:
spiz03032
]
Prokaryotic type
DNA Topoisomerases
GJ672_00020 (gyrB)
DNA repair and recombination proteins [BR:
spiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GJ672_00020 (gyrB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
DUF7236
Motif
Other DBs
NCBI-ProteinID:
QGM20812
UniProt:
A0A6B8JRC7
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All DBs
Position
3813..6248
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AA seq
811 aa
AA seq
DB search
MTDQTDSTQNTEYDSSQIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVADNAVDEAL
AGYCSEIEVTLHRDGSVTVGDNGRGVPVDIHPEEGRSAAEVIMTVLHAGGKFDNNSYKVS
GGLHGVGVSVVNALSDRLRLVVNKAGKVYMQEYAAGEPLTPLKVAGETTDSGTIITFHPS
PEVFTNIDFNYDILAKRFRELSFLNPGVRIALKDERSEKEDVFEYAGGIRAFVEHLNKNK
TPLHPAVFYLSTQRDDIVVEVAMQWSDSYQEAIFCFTNNIPQKDGGSHMSGFRGALTRTL
NNYMDSEGYSKKLKVSPSGDDIREGLTAVVSVKVPDPKFSSQTKEKLVSSEVKGVVESTL
SEALNAFLYENPNDARAIVEKVVDASRAREAARKAREMTRRKGALDVAGLPGKLADCQEK
DPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVEVGTLITA
LGCGIGREEFDPEKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMSVLVERGHVYIAQPP
LYKVKRGKQEHYVKDEAELTNYLLQMSLSGASLLPSEDTPVIGPEALETLIRQYLDTMAM
IDRLGRRSDPHILRAMVNLPPLAEDALQDGEAVAQWFERLSAAINTGLPTGTEYRVRTQS
GPDGGFQEAVVTKRMHGILYPYTFPAPFFLSREYQTIREVATALDGLLGPGAEIRRGERS
QPIDTFQAVVSWLMEEGKRGLSVQRYKGLGEMNPDQLWETTMNPETRRLLQVRIEDIVGA
DDIFTTLMGDQVEPRREFIEKNALQVSNLDV
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcaaacggattccactcagaacaccgagtacgattcctcgcaaatcaaggtg
cttcgcgggctcgatgcggtccgcaagcgccccgggatgtacatcggcgacacggacgat
ggcaccggcctgcaccacatggtttttgaagtggccgataacgccgttgacgaggcgctg
gccggttattgctcggaaattgaagtgacgctgcaccgggacgggtcggtcaccgtgggt
gacaacggccgcggagtgccggtggatattcatcccgaggaaggacgatccgccgccgag
gtcatcatgacggtcctccacgccgggggaaagttcgacaacaactcttacaaggtctcg
ggcggcctccacggcgtgggggtttcggtggtgaatgcgctgtcggatcggcttcgtctg
gtggtcaacaaggccggcaaggtctacatgcaggaatacgccgccggggagccgctgacg
cccctcaaagtggccggggagaccaccgacagcggaacgatcatcactttccatcccagc
cccgaagtcttcaccaatatcgacttcaactacgacatcctcgcgaaacggtttcgggag
ctctccttcctcaacccgggggtgcggatcgcgctcaaggacgaacgcagcgagaaggaa
gacgtttttgaatacgccgggggcatacgcgccttcgttgagcacctcaacaagaacaag
accccactgcatccggcggttttttatctcagtacccagcgagatgacattgtggtggaa
gtggccatgcagtggagcgactcctaccaggaagccatcttctgctttaccaacaacatc
ccccagaaggatggtggcagtcacatgtcggggttccggggcgcactgactcgaacgttg
aataactacatggacagcgaggggtacagcaagaaactcaaggtttcccccagcggcgat
gacatccgtgagggtctgacggcggtggtatccgtaaaggttccggatccgaaattctca
tcccagaccaaagaaaaactggtgtcctcggaagtgaaaggagtggtggaatccacgctg
tccgaggccctgaacgcttttctttacgaaaaccccaatgatgcccgcgccattgttgag
aaagtcgtggatgcgtcccgcgctcgggaggccgcccgcaaggcccgggagatgacccgt
cgcaagggtgccctggatgtggcgggtctgccgggcaagctggccgactgccaggaaaag
gaccccagcctctccgagctgtacctggtggagggtgactccgccggcggctctgccaag
cagggccgggatcgacggacccaggccatcctgcccctgaaaggcaagatcctgaacgtc
gagaaggcccgttttgacaagatgctgtcctccgtcgaggtgggcacgctcatcacggcc
ctgggctgtggcatcggccgggaagaattcgacccggaaaagctgcgctaccatcgaatt
atcctgatgaccgatgcggatgtggatggctctcacatccgcaccctcctgctgacgttc
ttctatcggcagatgtcggtgctggtggagcgggggcacgtctatatcgcccagccgccg
ctttacaaggtcaagcggggcaagcaggagcattacgtcaaggacgaagccgaattgacc
aactatctgcttcagatgtcgctgtccggcgcttctttgctgccctccgaggacaccccg
gtgatcgggccggaggcgctggagacgctgatccgccagtaccttgacaccatggcgatg
atcgatcgcctggggcgtcgctccgatcctcatatccttcgggccatggtcaacctcccg
ccactggccgaggatgccctgcaggatggcgaggccgtggcgcagtggtttgaacggctg
tccgccgccattaacacgggattgccgaccggtacggagtaccgggttcgcacccaatcc
gggccggatggcggcttccaggaagcggtggtgaccaagcgaatgcacggcattctctac
ccctacaccttcccggcgcctttcttcctgtcccgtgaatatcagacgatccgcgaggtg
gcgacggccctggacgggctccttgggccaggcgccgagattcgccggggcgagcgttcc
cagcccatcgatactttccaggccgtggtcagctggttgatggaggaaggcaaacgcggc
ctgtccgtgcagcgctacaaggggctgggtgagatgaacccggatcagctctgggagacc
accatgaacccggagacccgccggctgctacaggtccgcattgaagatatcgtcggcgcg
gatgacatctttaccacgctgatgggcgaccaagtcgaaccgcggcgcgagttcatcgag
aaaaatgcgttgcaagtcagcaacttggacgtctag
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