KEGG   Spiribacter sp. 2438: GJ672_02660
Entry
GJ672_02660       CDS       T06294                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
spiz  Spiribacter sp. 2438
Pathway
spiz02024  Quorum sensing
spiz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spiz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GJ672_02660 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    GJ672_02660 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spiz03019]
    GJ672_02660 (hfq)
   03036 Chromosome and associated proteins [BR:spiz03036]
    GJ672_02660 (hfq)
Messenger RNA biogenesis [BR:spiz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     GJ672_02660 (hfq)
Chromosome and associated proteins [BR:spiz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    GJ672_02660 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM Gag_p24_C
Other DBs
NCBI-ProteinID: QGM21281
LinkDB
Position
527445..527696
AA seq 83 aa
MSKGQSLQEPFLNALRKEKIPVSIYLVNGIKLQGQVESFDQFVILLRNSISQMVYKHAIS
TIVPSRNVRTLLQEERNPEADDD
NT seq 252 nt   +upstreamnt  +downstreamnt
atgtcaaaggggcaatcattgcaggagccgtttctcaacgcgctgcgaaaagaaaaaatt
ccggtctccatttacctggtgaacgggatcaagctgcaggggcaggtggagtccttcgat
cagttcgtgatcctgttgcgtaattccatcagtcagatggtgtacaagcacgccatctcg
accattgtcccgtcacgtaacgtccgcacgttgttgcaggaggagcgcaatcccgaagcc
gacgacgattga

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