Spiribacter sp. 2438: GJ672_02775
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Entry
GJ672_02775 CDS
T06294
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spiz
Spiribacter sp. 2438
Pathway
spiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJ672_02775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiz03019
]
GJ672_02775
Enzymes [BR:
spiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJ672_02775
Messenger RNA biogenesis [BR:
spiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJ672_02775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
CMS1
P-loop_SecA
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QGM21301
UniProt:
A0A6B8JNS9
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All DBs
Position
complement(547195..548319)
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AA seq
374 aa
AA seq
DB search
MTFDDFGLRAELLDAIRASGYTTATPIQQRAIPHVLEGQDLLAAAQTGTGKTAAFTLPLL
QRLAADQPAPGRPPVRLLIVAPTRELAAQIHDSVRTYGRKLSLRSAVIFGGVGMQPQVDR
LRKGVDILIATPGRLLDHLQRGNLRLDRVQSVVLDEADRMLDMGFIHDIRRLMKQLPAQR
QTLLFSATFSTEIRRLASGMLSSPVEIDVAPRNSAAETVAQRVYRLEKAEKRRVLSRLIR
EGDWQQVLVFTRTKHGANNLSRQLDKDGLTTAAIHGNKSQSARTKALDGFKRGRVRVLVA
TDIAARGLDIDHLPHVVNYDLPHVAEDYVHRIGRTGRAGNEGEAISLVAPDEAKLLKGIE
RLLKRPLERAEAVS
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgatgatttcggcctccgcgccgaactgcttgacgccatccgggcgtcgggc
tacaccaccgccacccccatccagcaacgcgccatcccccacgttctcgaaggccaggat
ctgctcgccgccgcccagactggcaccggcaagacagccgcctttacgctgccgctactg
cagcgcctggcggcggaccaacccgccccgggacgcccaccggtcaggctgctgattgtc
gccccgacccgggagctcgccgcgcagatccacgacagtgtgcgcacctacggccgaaag
ctctctctgcgcagcgccgtgatcttcggcggcgttggcatgcagccccaggtggaccgc
ctgcgcaagggcgtcgacatactgatcgccaccccgggccgtctcctggatcacctccag
cgcggcaacctgcggctggatcgggtccagtccgtggtgctggacgaggccgaccggatg
ctggacatgggctttatccacgacatccgccgattgatgaagcagctccccgcccaacgc
cagaccctgctgttctctgcgactttttcgacggagattcgtcgcctggccagtggcatg
ctgagcagcccggtggaaatcgacgtggccccgcgcaacagtgcggcagaaaccgttgct
cagcgggtttatcggctggaaaaggcggaaaaacgccgggtactgagccgcctgattcgg
gaaggcgactggcagcaggtgctggttttcacccgcaccaagcatggcgccaacaacctg
agccgacagttggacaaggatggactgaccaccgccgccattcatggcaacaagagccag
tccgcccgcaccaaggccctggacgggttcaagcgcggccgagtgcgggtactggtggcc
actgacatcgccgcccgcggcctggacatcgatcacctgccccatgtggtgaactatgac
ctcccccatgtggccgaggactatgtccaccgcatcgggcgaacgggtcgcgctggcaac
gagggcgaagcgatttccctggtggcgccggacgaggccaagctgctcaagggcatcgag
cgcctgctcaagcgtccgctggagcgggccgaggcggtttcctga
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