Spiribacter sp. 2438: GJ672_04535
Help
Entry
GJ672_04535 CDS
T06294
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spiz
Spiribacter sp. 2438
Pathway
spiz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GJ672_04535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spiz03400
]
GJ672_04535
Enzymes [BR:
spiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GJ672_04535
DNA repair and recombination proteins [BR:
spiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GJ672_04535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGM21608
UniProt:
A0A6B8JP39
LinkDB
All DBs
Position
896141..899614
Genome browser
AA seq
1157 aa
AA seq
DB search
MSVADSPLLSPEPPSRPGDRQEWFGLAGDSPALAIAEAEVRHPGVLLVVTAGSAEAQQLR
RGLKFFAPNVAVEVMPDWEILPYDVFSPHQDIVSERLRALHRLPRLQSGIVIVPVATLVQ
RIAPPAFLESTVVRLAAGDSLFLDDMRRQLEAAGYRCVSEVLEHGEFAVRGSILDLFPMG
ASAPYRVDLFDTEIDSIRRFDPETQRSEERLDAIEILPAHEFPSDPEGIARFRRQYRARF
EGDPMESTVYRSVSDGHIPGGVEAYLPLFFEATASLFDHLPGDALVVRHGDADGRLEEEW
RAIGERYEQRRHDRERPLLAPAELYLAPDDIRQAMNRHPLVDIPADYRQEASRARDRLLP
AGPLPPVAPARGDDTPLETLKGFLAEAEGPVLFTAETAGRREALRERLAAAGIQPSAVES
WPAWRQSAPAVGLAVAPLDHGFRCLESGAAVIPEAELFVQRAEQRRRRHSAPQRDPEAVI
RDLTDLRAGSPVVHEQHGVGRYQGLQMLTIDGVATEFLTLEYADGDKLYVPVASLHLVSR
YTGADADTAPLHRLGSGQWEKARRRAAQKARDVAAELLDIYARREAQGGTAHTIPDEEYD
RFAAQFPFEETPDQETAIHAVLQDLKQPRPMDRVVCGDVGFGKTEVAMRAAFAGVQSGRQ
VAVLVPTTLLCQQHYQNFSDRFADWPVRIAQLSRFQSSAEQAQVLQDAENGRVDIVIGTH
KLLQKSVHFRNLGLLVIDEEHRFGVRQKEALKRLRANVDVLTLTATPIPRTLNMSLAGLR
DLSIIATPPARRLAVKTFVSEWNEGMVREACLRELHRGGQVYFLHNDVDSIQRVAEELAD
LIPEARIRTAHGQMPERELERVMLDFYHQRDNILVCTTIVESGIDVPTANTIVINRADRL
GLAQLHQLRGRVGRSHHRAYAYLLAPPRRSQTADAAKRLEAIASLEDLGIGFALASHDLE
IRGAGELLGEGQSGQIHEVGFSLYNDLLDRAVKALKSGKEPALDQPLADMTEVDLHVPAL
LPEDYLPDVHTRLVMYKRIANAPDEGALRDLQVEMIDRFGLLPEPAQNLMAVSRLRQRAQ
ALGIDRVEVGPGGGILQFSSQAQVDPAALVRMVQEESSVYRLEGQERLRFSRETETAEQR
VAAVERILDRITLKEAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttgctgattctccgctcctgtcgcccgagccacccagccgtccgggcgatcgc
caggagtggttcgggctggccggcgactcgccggccctcgcaattgccgaggccgaggtg
cgccatccgggtgtgctgctcgtcgtgaccgcgggaagcgccgaggcgcagcaactacgc
cgcgggctgaagttctttgcgccgaatgtcgccgtcgaggtgatgcccgactgggagatc
cttccctacgatgtgttctcgccccaccaggacatcgtctcggagcggttgcgagcgtta
caccggctgccccgcctgcagagcgggatcgtcatcgtgccggtcgccaccctggtacag
cgcatcgcgccgccggcgtttctcgagtcgacagtggttcggctggccgccggcgacagc
ctgttcctggatgacatgcgtcgccagctcgaggcagcgggttatcgctgcgtctccgag
gtgctggagcacggggagttcgccgtgcgggggtcgattctcgatctcttccccatgggc
gccagtgctccttatcgcgtggacctttttgataccgagatcgactccattcggcgcttt
gacccggagacccagcgcagcgaggaacggctggacgccatcgaaatcctgccggcccac
gaattcccgtcggatcccgaggggatcgcccgcttccgccgtcagtatcgggcgcgattc
gaaggcgaccccatggagagcaccgtgtaccgctcggtcagtgatggccacattcccggc
ggcgtcgaggcttatttgccgcttttcttcgaagcgaccgccagcctgttcgatcatctc
ccgggtgacgccctggtggtgcggcacggcgatgcggatgggcggcttgaggaggagtgg
cgcgctatcggtgagcgttacgaacaacgccgacacgaccgggaacgtcccctgctcgcc
cccgccgaactctatctggccccggacgacattcgtcaggccatgaaccgccacccgctg
gtggatattccggcggattaccgtcaggaggctagccgtgcccgggatcgcctgttgccg
gcgggaccgctgcccccggtggcgccggcacgaggcgatgacaccccgctggagaccctc
aagggcttcctggcggaagctgagggcccggtgctcttcaccgccgagaccgccggtcgc
cgggaggcgctccgggagcgactggctgctgcgggcattcagccatcggccgtggaaagc
tggcccgcctggcggcaatccgcaccggccgtggggctcgccgtcgccccgctggatcat
ggcttccgctgtctggagagcggcgccgcggtgattcccgaggcggagctgttcgtgcag
cgggcggagcaacgccgacgtaggcattccgcaccccagcgggatccggaagcggtgatt
cgtgacctgaccgacctgcgggcgggttcgccggtggtccacgagcagcacggcgtgggt
cgctatcagggcctgcagatgctgaccatcgacggggtggccacggaatttctcaccctg
gaatatgccgacggtgacaagctctacgtgccagtggccagcctgcatctggtgagtcgc
tacacgggggctgacgcggataccgcaccgctgcaccggctcggcagcggccaatgggaa
aaggcccggcgccgggccgcccagaaagcccgcgacgtggccgccgaactgctggatatc
tatgcccgtcgggaagcccagggcggcacggctcacaccattcccgacgaagaatatgac
cggttcgcggcccagttccccttcgaggagaccccggatcaggagaccgccattcatgcg
gtgctccaggatctgaaacagccgcgaccgatggaccgggtggtctgcggtgatgtggga
ttcggcaaaaccgaggtcgccatgcgggcggcgttcgccggggtgcagtccggccgacag
gtggcggtactggtgcccaccaccctgctctgccagcagcattatcagaacttcagtgac
cgcttcgccgactggccggtgcgcatcgcccagctttcccgttttcagtccagcgcggaa
caggcgcaggtgctgcaggatgccgagaatggacgcgtggacatcgtcatcggcacccac
aagctgcttcagaagtccgtgcatttccgcaacctcggcctcctcgtcatcgacgaagag
caccggttcggggttcggcagaaagaggcgctcaaacggctgcgggccaatgtcgatgtc
ctcaccctgaccgcgacccccattccccgcacattgaacatgtcgcttgccggtctgcgg
gatctttcgattatcgccacgccgccggcgcgccggctggcggtcaagaccttcgtgagc
gagtggaacgagggcatggttcgggaagcgtgtctgcgcgagctccatcgtggcgggcag
gtgtactttctgcacaacgatgtcgatagcatccagcgagtcgccgaggagctggccgat
ctgattcccgaagcgcgcatccgcaccgcccacgggcagatgccggagcgggaactggag
cgggtgatgctggatttctatcaccagcgggacaatatcctcgtctgcaccacgatcgtc
gagagcgggatcgatgtgcccaccgccaataccatcgtcatcaaccgagctgaccgactg
ggtctggcccagctccaccagctgcgcggtcgggtgggacgctcccaccatcgagcctac
gcgtatctgctcgccccaccgcggcgcagtcagacggcagatgcggccaagcgactggag
gccattgcctccctggaggacctgggcatcgggtttgcgctcgccagtcacgacctcgag
attcggggggccggtgagctactgggtgaaggccagagcggccagattcacgaggtggga
ttcagcctgtacaacgatctgctggaccgggcggtcaaagcgctcaaatccggcaaggag
ccggcgctggaccagccgctggccgacatgacggaggtggatctgcatgtcccggccctg
ctgccggaggactacctgccggatgtccacacccggctggtgatgtacaaacggatcgcc
aacgcacccgatgagggggcgttgcgggatctgcaggtggaaatgatcgaccggttcggg
ctccttccggaaccggctcaaaacctcatggccgtctcccgcctgcggcagcgggcccag
gcactcggcatcgatcgggtcgaggtgggtccgggtggcggcattctgcagttctcttct
caggcccaggtggacccggccgctctggtgcgaatggttcaggaggaatcctcggtgtat
cgtctggaggggcaggagcggcttcgattcagtcgggagactgagacggccgaacaacgg
gtggcggccgttgagcgcatcctggatcgaatcaccctcaaagaggctgcgtga
DBGET
integrated database retrieval system
