Spiribacter sp. 2438: GJ672_05740
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Entry
GJ672_05740 CDS
T06294
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
spiz
Spiribacter sp. 2438
Pathway
spiz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GJ672_05740 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spiz03400
]
GJ672_05740 (recB)
Enzymes [BR:
spiz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GJ672_05740 (recB)
DNA repair and recombination proteins [BR:
spiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GJ672_05740 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QGM21810
UniProt:
A0A6B8JR35
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All DBs
Position
1151614..1155435
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AA seq
1273 aa
AA seq
DB search
MSPTPLDALNTPLTGRHLIEASAGTGKTFNLAALYLRLVLGHDPTNPERGPMLPPEILVM
TFTRAATRELRDRIRSRLAGAARCFAGVEDPDPGDAILAGLLAAYPDHADRARHANHLMA
AADWMDEAAIYTIDSFCQRMLRQHAFDSGHAFEFELSPDESTLTREAIEDYWREHIYPLN
ARELAVLDEALPAKASLTKARLARDLRAFLGQSHRLRIPSESSTGMIKRHSRALDKAIDG
LRRAIGENGQELETMDQALNDAWEQKIRDAGTSPSKKNWEPSFKTPLKHWHQQGDIGLPD
VVLKKLGSGALQDGCNKNKQLPESLRHHPIVEAVDKILNVRAKPAELAASFYAHAAGWVD
QRVAQARERLGVFGFKDMLKRLRDALHHPETGARLAGVIRQQFPVALVDEFQDTDPIQYA
ILRSVYIDPIPPGGEVSAPDIGATSLFLIGDPKQAIYGFRGADLDTYIEAAEGVPEGQQH
TLARNYRSSTAMVDAVNALFEGSPLSPNQFLQDGIDYHRVDANGRRARFEVGGEAVPALT
LGHLEDTDDDDTPISLPLTLYRPRMAEIAAAHIHDLLARGHHGEAGFRDGEGFTPLAPAD
IAVLVRTGQEATLIRDALRHRGLASVYLSDRDNVLHTQEAEDVLHWLHAMAEPESERRVR
TALGTASLGWDWATLDSLFSSDARWAAALEQFQDYADRWQQRGILPALRELIHDQAIAPR
LLGQLGGERRLSNLLQISELLQEASATLDGPASLIRWLEDARADDTDGTPKEYRLRLESD
SALIKVITLHKSKGLEYPLVFMPFVCNFRSENVQTPRLGPDDAGDAWPICLKANNEEKEA
AEHARLAEDMRLLYVGVTRAVHACWLGTAAVREKNTRNTARRNTARQVHLHRSAFGRLLG
CPDDARPEDVGTLLSGLADSHDAIYFEPVALPASTADEAPVAVPAPAMARARAYEARSPN
SERWWIASYSALVEDGPKAWTPGTAEEDVLTQETLDTDPVRSGSSDAAPAPAPANASHQE
MQPANAIATIPPGPATGSLLHRLLESLAARQFPGAREPAFAQALDRSLRGGHWREWREPI
EDWLGRVSELPLPLPDGGPMRLTDLSAQDFIAELEFLIAIREVNTQEIDTVIRQHTLNGV
GRPALDDNTLNGMVKGYIDLVFVHNGRYWVMDYKSNRLGDAASDYGPDALRQAVIAKRYD
AQYALYLLALHRLLQARLGDDYDYDRHIGGAACWFLRGIDHPGAGLHAERPDRALVEALD
ALFNPHIEANHDR
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagccccacgcccctggacgcgctcaatacccccttaaccggccgccacctgattgag
gccagcgccgggaccggcaagaccttcaacctggcggcgctttatctgcgactggtgctg
ggccatgaccccacaaacccggaacggggtcccatgctgcccccggaaatcctggtgatg
accttcacccgggccgccacccgggagctgcgggaccgcattcgcagccgtctggcaggg
gctgcccgctgctttgccggcgttgaggatccggacccgggagatgccatcctggccgga
ctgctggcggcctatccggaccacgccgatcgggcgcgccatgccaaccacctgatggcg
gccgccgactggatggacgaggcggcgatttacaccatcgacagcttctgtcagcggatg
ctgcgccaacatgccttcgactccggtcacgcctttgaattcgagctcagcccggatgag
tcgaccctcacccgggaggccatcgaggattactggcgcgagcacatttacccgctgaat
gcccgggaactggcggtattggacgaggcactgcccgccaaagcgtccctcaccaaggcg
cgactcgcccgcgacctgcgggcgtttcttggccagtcgcatcggctcaggatcccgagc
gaatcctccaccggaatgatcaaacgccactcaagggcgctggacaaagccattgacggg
ctgcgtcgcgccataggcgaaaacggccaggagctggagaccatggaccaggcgctcaac
gacgcttgggagcagaagatccgcgatgccgggacctcgccaagcaaaaaaaactgggag
ccgagtttcaaaaccccgcttaagcattggcatcaacaaggcgacatcggcttgcccgac
gtcgtcctgaagaaattgggatccggcgccctgcaagacggctgcaacaagaacaagcag
ctgccggaatcactgcgccaccacccgatcgttgaagccgttgacaagatactgaacgtc
cgggccaagcccgctgaactggcggcctccttctatgcccatgccgccggatgggtggat
cagcgggtggcccaggcccgggagcggctcggcgtttttggtttcaaggacatgctcaag
cgcctgcgggatgccctccatcaccccgaaaccggcgcccggctggccggcgtgatccgc
cagcagttccccgtcgcgctggtggacgaattccaggacaccgacccgattcagtacgcc
attctgcgatcggtctacatcgacccgatcccccccggtggggaagtcagcgcgccggac
atcggcgccaccagtctcttcctgatcggcgatcccaagcaggccatctacggttttcgc
ggcgccgacctcgacacctatattgaggcggccgagggggtccccgagggtcaacagcac
accctggcccgcaactatcgctcgagcacggcgatggttgacgcggttaacgcactcttc
gaaggctctccgctgagccccaaccagttcctccaggacggcattgactatcaccgcgtg
gacgccaacggccgcagggcgcgcttcgaggtcggtggcgaagccgtcccggcgctcaca
ttggggcaccttgaggacaccgacgacgatgacacccccatcagtctgcccctgacgctt
tatcgcccccggatggcggaaatcgcggcggcccacatccatgacctgctggcccggggc
catcacggtgaggccgggttccgcgatggcgagggcttcacgccgctggcgcccgcggat
atcgccgttctggtgcgcaccggccaggaggccaccctgattcgcgatgcgctgcgccac
cggggcctcgcgtcggtgtatctctcggatcgggacaacgtcctgcacacccaggaggcc
gaggatgtcctgcactggctgcacgccatggccgagccggaatcggagcggcgggtgcgc
accgccctcggcaccgccagccttggctgggactgggcgaccctggattcgttgttcagc
agcgatgcccgctgggcagcggcactggagcaatttcaggactatgccgaccgctggcaa
cagcgcggcattctgccggcactgcgagagctcattcatgaccaggccatcgccccccgc
ctgctcggccagctgggcggcgagcgacggcttagcaatcttttgcaaatcagtgagttg
cttcaggaagcttcagcgacactggatggtcctgccagcctgattcgctggctggaggac
gcccgcgcggacgacacggacggcaccccgaaggagtatcgactgaggcttgaaagcgac
tcggcgctgatcaaggtgatcaccctgcataaatcgaagggtctcgagtacccgctggtg
ttcatgccgttcgtgtgcaattttcgatcggagaatgtccagaccccccggctggggcct
gacgacgccggcgacgcctggccgatctgcctcaaggccaataacgaggagaaagaggcg
gccgagcatgcccgcctggcggaagacatgcggctgctgtacgtgggcgtcacccgcgcg
gtccatgcctgctggctggggacggcggcggtacgggaaaaaaatacccgtaacacagcc
cgccgtaacacagcccgccaggtgcacctccaccgctcggccttcggtcgcctgctgggc
tgcccggatgacgccaggcccgaggatgtcggcaccctcttgagcggcctggcggactcc
catgacgcgatatacttcgaaccggtcgcgctacccgcttccactgcggatgaggcgccg
gtggcagtgcccgccccggccatggcccgggcacgggcctatgaagcccgctcccccaac
agcgagcgctggtggatcgcgagctatagcgccctggtggaggacggacccaaagcctgg
acaccggggaccgccgaagaggatgtcctcacccaggaaaccctggacaccgacccggtg
cgttccggcagtagcgatgcggcgccggcccctgccccggccaacgccagtcatcaggaa
atgcaaccggcaaacgccatcgccaccattccgccgggacccgccaccggcagcctgttg
catcgcctgcttgaatccctggcggcacggcaatttcccggcgcccgggagcccgccttt
gcacaagcgctggaccgcagcctgcgcggcgggcattggcgcgagtggcgcgaacccata
gaggactggctgggccgggtcagcgaactgccactgcccctgccagacggcgggccgatg
cggctgaccgatcttagcgcccaggactttatcgccgagctggagttcttgatcgccatc
cgtgaggtgaatacccaagagatcgacacggtgatccgccagcacacgctaaacggcgtg
ggtcggccggcgctggatgacaacaccctcaatggcatggtcaagggctacattgatctg
gtctttgtccacaacggccgctactgggtgatggattacaaatccaaccgcctcggcgat
gccgccagcgattatggccctgacgccctgcgccaggcggtgatcgccaagcgctacgac
gcccagtacgccctctacctgctggcgctgcaccgactgttgcaggcccgcctgggcgat
gactacgactacgaccgtcacatcgggggcgcggcctgttggttcctgcgcggcatcgac
caccccggcgccggcctgcacgccgagcgccccgaccgggccctggtggaagcgctggat
gccctgttcaacccgcacatcgaggcaaaccatgatcgctga
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