Spiribacter sp. 2438: GJ672_06430
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Entry
GJ672_06430 CDS
T06294
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
spiz
Spiribacter sp. 2438
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spiz03019
]
GJ672_06430 (hrpA)
Enzymes [BR:
spiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GJ672_06430 (hrpA)
Messenger RNA biogenesis [BR:
spiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GJ672_06430 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
nSTAND3
AAA_19
ABC_tran
T2SSE
FtsK_SpoIIIE
NACHT
AAA_30
RsgA_GTPase
AAA_23
AAA_29
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QGM21931
UniProt:
A0A6B8JQH6
LinkDB
All DBs
Position
complement(1290643..1294380)
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AA seq
1245 aa
AA seq
DB search
MADNRGSGQHRREAARIARRDAPLKPTYALDLPVLAHAETIREAVQSHQVVVICGETGSG
KSTQLPKLMLELGRGIDGMIGHTQPRRIAARSLASRVAEECGTEVGRGVGYRVRFGDRTT
PETRVKLLTDGMLLAETQGDRDLADYDTLIIDEAHERSLNIDFLLGYIKRLLPRRPDLRV
IITSATIDPKRFSAQFNDAPIIEVSGRSYPVEVRYRPLAALNEDERERTLRQGVLDACDE
LAGLGRGDILVFLPGEREIRQCAEALRKHHPPHTEVLPLFGRLSNAEQQRVFAAHRGRRI
VLATNVAETSLTVPGIRYVVDSGLARISRYSYRTKVQRLPVEPVARSSADQRAGRCGREA
PGVCIRLYDEADYQARPAFTEPEILRTNLASVILQMKHLRLGDIDAFPFIEPPDPRYVKD
GLKLLNELGALNRRQRLSRLGQRLARLPVDPRLARILLAGEREAALAEMLVIAAALSIQD
PRERPMDHRDAADAAQAGWQDRQSDFITLLRLWNDYREQARHLSRRKLQVWCHDHFLSHV
RMREWADVHGQLRGLVRGMGLTENDTPARGVGIHRALLTGFLSNVARREDGEEYRGPRGL
KLAIHPGSGVARRRPRWIVAAELVETRRVFARTAAEVRPEWIEPLATHLVKRRYHDPWWQ
ADRGKVLGREDVTLYGLPIVSGRKIDHARVAPEECRAIFIRDGLLGTPPPNPPDFLKANQ
ALAEAVETLEAKTRRRDVMIDQQALFDFYNERLPAEVVDGPSLSRWLKAGGDDASLRLTR
EQLMSSTADPVAEAYPDHWAIAGVRLPLQYHFEPGAADDGVTVRVPIAALNALPPEPFEW
LVPGLLEEKVVTLIRALPKSLRRNFVPVPDFARAVLESLPDREGSLEAAVRQELRRMTGI
DLPGDVWESLELPAHLQMRFAIVDGDGRAIASGRDLPALQRDLAGQASERFSAPTDSGFE
KDRVHDWDFGALPERVPFQQGGVTLQGYPALQVEGEHVALRLLDSPERAELSHRAGVRRL
LMKRFAQQARHLRRGLEGLDRMALSYRDVDTPEALKRDLAEAAFDRTFLSDTVPRDREAY
RACGAAGRERLVEEGERLRDLVSDILARQDAVRRVLRRDVPLGLIDSFQDVRQQLDGLIY
PGFLLQTPAGRLSELPRYLEGISRRLERLQRDPNRDQSGLAVIAPHQLRLDEARARHARR
GIRDGALTTVRWMLEEYRVSLFAQELGTRERVSEKRLAQAWEAVR
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaccgaggatccggtcagcaccggcgcgaagcggcacgcatcgctcggcgt
gatgcgcccctgaaaccgacctatgccctggacctgccggtcctggcccacgccgagacc
attcgcgaggcggtccagtcccatcaggtggtggtcatctgtggcgagaccgggtccggc
aagagcacccagctgccaaagctgatgctggagctggggcggggcatcgacggcatgatc
ggccacacccagccaagacgaattgccgcccgcagcctcgccagccgcgttgccgaggag
tgcggcaccgaggtgggccgtggtgtcggctaccgggtccgcttcggcgaccgcaccacg
ccggagacccgtgtcaagctgctcaccgatggcatgttgctcgccgagacccaaggcgac
cgggatctggccgactacgacaccctgattatcgatgaggcccacgagcgcagcctcaac
attgacttcctgctggggtatatcaagcggctgctgccacgacggcctgacctgcgggtg
atcatcacctccgcgaccattgatccgaaacgcttttccgcgcagttcaatgacgccccg
attattgaagtgtcgggacgcagctatccggtggaggttcgctaccgtccgctggcggcg
ctcaacgaggacgagcgggagcggaccctgcggcagggggtgctggacgcctgcgatgag
ctggccggtctgggtcggggtgacatcctggtctttctccccggcgagcgggagatccgc
caatgtgccgaggccctgcgcaagcaccatccgccccacaccgaagtgctgccgctattt
ggccgactgtccaacgccgagcagcaacgggttttcgccgcccatcgtggccggcgcatt
gttctggccaccaatgtggcggagacgtccctcacggtgcccggtatccgctacgtggtg
gacagcggcctggcgcgcatcagccgctacagctatcgcaccaaggtccagcgcctgccg
gtggaacccgtggcccgctccagcgcggaccagcgggcggggcgctgcggccgtgaggcg
ccgggtgtctgtatccgcctctacgacgaggcggattatcaggcccgcccggcgttcacc
gagccggaaattctgcggaccaacctggcctcggtgattctccagatgaagcacctgcgg
ctgggggatattgacgcctttccgttcatcgagccgccggatccgcgctatgtcaaagac
ggcctcaagctgctcaatgaactgggggcgctcaaccgccggcagcggctgtcgcggctc
gggcagcgcctggcccggctgccggtggaccctcgactcgcgcggattctgctggcgggg
gagcgggaggccgcattggcggagatgctagtgatcgcggcggcgctctccatccaggat
ccgcgggagcgccccatggatcatcgggatgccgccgacgccgcccaggcggggtggcag
gatcgccagtccgacttcatcaccctgctgcggctctggaatgactatcgggagcaggcc
cggcacctgagccggcgcaagctgcaggtctggtgccatgatcatttcctctcccatgtt
cggatgcgggaatgggcggacgtccatggccagctgcgtgggctggtgcggggcatgggc
ctgaccgagaacgacacgccggcccggggcgtgggcattcatcgggcactgctgacggga
tttttgtccaacgtggcccgtcgcgaggatggcgaggagtatcgggggccccggggcctc
aagctggcgattcacccggggtcgggggtggcccgtcgtcgcccgcgctggatcgtggcc
gccgagctggtggaaacccgccgggtgtttgcgcgaaccgccgccgaggttcggccggag
tggatcgagccccttgccacccacctggtcaagcggcgctaccacgacccctggtggcag
gcggaccggggcaaggtcctggggcgggaggacgtcaccctctacggtctgcccatcgtc
agtggccgcaagattgaccatgcccgggtcgcgccggaggaatgccgggccatcttcatc
cgtgacgggctgctgggtacgccgccgccgaacccgccggactttctgaaggccaatcag
gccctggcggaagccgtggaaaccctggaagccaagacccgacgccgggatgtgatgatt
gaccagcaggcgctgttcgatttctataacgagcggctgccggccgaggtggtggatggt
cccagtctgtcgcggtggctcaaggcgggcggcgatgacgcgtcgctgcggctgacccgc
gaacagctcatgtccagcaccgcggatccggtggccgaggcttaccccgatcactgggcc
attgccggcgtccggctgccccttcagtaccacttcgagcccggcgcggcggatgacggc
gtgaccgtgcgggtgcccattgcggccctcaatgcgctcccgccggagccctttgaatgg
ctggtgcccggattgctggaggaaaaagtggtaaccctgattcgggccctgcccaagtcg
ctgcgccgcaatttcgtgccggtgccggacttcgcccgggcggtgctggaatcgctgccg
gatcgcgaaggctcactggaggccgcggtccgccaggagctgcggcgcatgaccggcatt
gacctgcccggcgatgtctgggaatccctcgagctgccggcccatctgcagatgcgattc
gccattgtggatggcgacggccgggccatcgccagcggtcgcgatctgccagcgctgcag
cgggatctcgccggccaggcctcggagcgtttctcggcaccgacggacagcggctttgaa
aaggaccgggttcacgattgggatttcggtgccctgccggagcgggtgcccttccagcag
ggtggcgtgaccctgcagggctacccggccctgcaggtggagggggagcacgtggcgctg
cgtctgctggatagccccgagcgcgccgagctgagtcatcgcgccggcgtgcggcggctg
ctcatgaagcgcttcgcgcaacaggcccggcacctgcgtcgcggcctggaggggctggat
cgcatggccctgagctaccgcgatgtggacacccccgaggcgctgaaacgggatctggcg
gaggcggccttcgaccggacattcctgagcgacacggtgccccgggatcgggaagcctac
cgggcctgtggtgcggcgggtcgtgaacgcctggtggaggagggtgaacggctgcgggat
ctggtctctgatatccttgcgcgccaggatgccgtacgtcgggtgctgcggcgggatgtg
cccctgggcctgatcgacagtttccaggacgtgcgccagcagctggatgggttaatttac
cccggctttctcctccagaccccggccgggcggctgagcgaactgccccgctatctggag
gggatatcgcgtcgcctggagcggctgcagcgggatcccaatcgggaccagtcgggtctg
gccgtgattgcaccccaccagctccgactggacgaggcccgggcgcggcatgcccgtcgc
gggattcgtgacggggcgctgaccacggtgcgctggatgctggaggaataccgggtctcc
ctgtttgcgcaggagctgggcacccgtgagcgggtctccgagaaaagactggcccaagcc
tgggaagcggtgcgttga
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