Spiribacter sp. 2438: GJ672_07150
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Entry
GJ672_07150 CDS
T06294
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
spiz
Spiribacter sp. 2438
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
spiz01011
]
GJ672_07150
Enzymes [BR:
spiz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
GJ672_07150
Peptidoglycan biosynthesis and degradation proteins [BR:
spiz01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
GJ672_07150
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
Cyanophycin_syn
Motif
Other DBs
NCBI-ProteinID:
QGM22597
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Position
1448527..1450098
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AA seq
523 aa
AA seq
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MGPVFIALFAVGCANVGDPTRSTDGAHDSSAARGMPHEVAGTASRDFSGLTEAEKALPPE
TVWDRIRQGYGIPGHDNERVQAEMQRYAGMTSYWERVSERARPYMYHIVHSLEERDMPME
LALLPVVESAFQPFAYSRSSAAGLWQFVPATGRHFGLDQNWWYDGRRDVLASTDAALTYL
DYLHDMFDGDWLLAIAAYNAGEGTVSRAIRRNENAGQPTDYWSLSLPQETMNYVPRLLAM
SELVGHPEKHGLILVDIPNEPFLKRVDLDRQIDLALVAELSGLEMDTIYELNPGFNRWAT
APDGPHHLLLPRDRADSFNAALADHPPSEWMRWQRHRVAQGETLGGIANRYRVPVGALRE
ANNLNGDLIRAGADLLVPLASRPTDRAGQTASAGSGQSERQRYDHVVQRGESLWTIARSY
GVRVGDLVRWNDLDANAVLPLGERLVIWSETEGSRLASPGQRVQSVTYTVRQGDSLYRIA
RQFSVGINDLRRWNGIAEGTYLQPGQRLEMQVDVTALDGARVN
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgggtccggtcttcattgccctgttcgccgtcggctgcgctaacgtcggcgatccgacg
cgttcgacggatggtgcccacgacagcagtgcggcgcggggcatgccgcatgaagtggca
ggcaccgcgtcacgggatttttccggactgacggaggcagaaaaggccttgccaccggag
accgtctgggaccgtatccgccagggctatggcattccaggccacgataacgagcgcgtg
caggcagaaatgcaacgctacgcgggaatgaccagctattgggagcgggtttcggagcgg
gcgcggccatacatgtatcacatcgttcactccctcgaggagcgggacatgcccatggag
ctcgcgctactaccggtggtggagagcgcgttccagccgttcgcgtattcacgaagcagc
gccgccgggctctggcagttcgtccccgctaccggtcgccacttcgggctggaccagaac
tggtggtatgacggccgccgggacgtgttggcgtccacggatgcggcgctgacctacctg
gattaccttcatgacatgttcgacggcgactggctgctggccatcgccgcttacaacgcc
ggggaagggaccgtttcccgcgccatccggcgaaacgaaaacgcgggccagcccaccgac
tactggtcgttgagcctcccgcaggagaccatgaactacgtgccccggctactcgccatg
agtgagctggtgggacatcccgagaagcacggcctgatactggtggacatccccaatgag
ccctttctgaagcgggtggatttggaccgtcagatcgatctggccctggtggccgagctc
tcgggcctagagatggacaccatttacgagctgaacccggggttcaaccgctgggcgacc
gcgcctgatgggccccatcacctgttgctacccagggaccgggcagacagtttcaatgcc
gccctggccgatcacccgccatccgagtggatgcgctggcaacgtcaccgcgttgcgcag
ggcgagaccctcggcggcatcgccaatcgctatcgagttccggtcggcgcgttgcgtgag
gcgaataacctcaacggtgacctgattcgggccggtgccgatctcctggttcccctggcc
agccgccccaccgaccgagccggccagaccgccagcgccggcagcggacagagcgagcgg
caacgctatgatcacgttgtgcagcggggcgaaagtctgtggaccattgcccggagctat
ggcgtcagagtgggcgatctggtgcgctggaacgacctggatgccaacgcggttctcccc
ctcggggagcggctggtgatctggagtgaaactgagggaagccgtttggccagccccggc
cagcgggttcagtcggtgacttacaccgtccgccagggcgattccctttaccgaatcgct
cgccagttcagtgtcgggatcaatgatctgcgacgctggaacggcattgccgaaggaacc
tatctgcagccgggccagcgacttgagatgcaggtggatgtcaccgccctggatggcgcg
cgggtcaactga
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