Spiribacter sp. 2438: GJ672_08225
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Entry
GJ672_08225 CDS
T06294
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
spiz
Spiribacter sp. 2438
Pathway
spiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJ672_08225 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spiz03021
]
GJ672_08225 (rpoA)
03400 DNA repair and recombination proteins [BR:
spiz03400
]
GJ672_08225 (rpoA)
Enzymes [BR:
spiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJ672_08225 (rpoA)
Transcription machinery [BR:
spiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJ672_08225 (rpoA)
DNA repair and recombination proteins [BR:
spiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJ672_08225 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RAD51D_N
BetaGal_dom3
Motif
Other DBs
NCBI-ProteinID:
QGM22244
UniProt:
A0A6B8JVS0
LinkDB
All DBs
Position
complement(1659142..1660140)
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AA seq
332 aa
AA seq
DB search
MQGQLKNFLKPRVVDVKAVNDRRAHITLEPLERGFGHTLGNALRRVLLSSMPGFAVTEVE
IDGVLHEYTAIEGVQEDVVDVLLNLKNLAVRLVGRDEATLRLHKKGPGVVTAGDIAAEQN
IEVKNPELVICNLTKAGEISMSITVSSGRGYEPANARNPEEERTIGRLALDATYSPVRRV
AYNVESARVEQRTDLDKLVMDIETSGVIEPEEAIRLAAGVLRDQLSVFVDLEGGEGELEP
TRREPEVDPVLMRPIDDLELTVRSANCLKAENIHYVGDLVQQTEVELLKTPNLGKKSLNE
IKEVLAQNGLQLGMRLENWPPASLEDRGLATG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcagggccagttgaaaaatttcctcaagccgcgagtggttgacgttaaagccgtcaac
gaccgccgcgctcacatcaccctcgagccgctggagcggggcttcggccacacccttggc
aacgcgctgcggcgggttctgctgtcgtccatgcccggctttgcggtcaccgaggtcgaa
attgacggcgtgcttcacgagtacaccgccatcgagggcgttcaggaagacgttgtcgac
gtgctgctgaacctcaagaatctggccgtgcgcctggtgggtcgcgacgaggccaccctc
cggctccacaagaaggggccgggcgtggtgaccgcgggagacatcgccgccgagcagaac
atcgaagtcaagaacccggaactggtgatttgcaatctcaccaaggcgggtgagatcagc
atgtccatcacggtgtccagcggccgtggttacgagccggccaacgcccgtaatcctgaa
gaggagcgcaccattgggcgtctggcgctggacgccacctacagcccggtgcgtcgggtg
gcctacaacgtcgagagcgcccgtgttgaacagcgcaccgacctcgacaagctcgttatg
gacatcgagaccagcggcgtgatcgagcccgaggaggccatccgtctcgccgccggcgtg
cttcgcgaccagctgtcggtgttcgtggatctcgaaggcggcgagggcgaactggagccc
acccggcgtgagcctgaggtggatccggtgctgatgcggcccatcgatgatctggagctg
accgtgcgctcggccaactgcctgaaggccgagaacatccactacgtgggtgacctggtt
cagcagaccgaggtggagcttctcaagacgcccaacctcggcaagaaatcgctcaatgaa
atcaaggaagtcctggcacagaacgggcttcagctgggcatgcgcctcgagaactggccg
ccggccagcctcgaggaccgtggtctggcgaccggttag
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