Spiribacter sp. 2438: GJ672_08380
Help
Entry
GJ672_08380 CDS
T06294
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spiz
Spiribacter sp. 2438
Pathway
spiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJ672_08380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spiz03021
]
GJ672_08380 (rpoC)
03400 DNA repair and recombination proteins [BR:
spiz03400
]
GJ672_08380 (rpoC)
Enzymes [BR:
spiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJ672_08380 (rpoC)
Transcription machinery [BR:
spiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJ672_08380 (rpoC)
DNA repair and recombination proteins [BR:
spiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJ672_08380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
gerPA
DUF4419
Motif
Other DBs
NCBI-ProteinID:
QGM22273
UniProt:
A0A6B8JRM8
LinkDB
All DBs
Position
complement(1676780..1681033)
Genome browser
AA seq
1417 aa
AA seq
DB search
MKDLLNLFKQPGAQLDDFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCA
KIFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIELASPAAHIWFLKS
LPSRIGLLLDMTLRDIERILYFEAFVVIEPNMTPLTKHQLLSDEQYLDAMEQYGDEFDAR
MGAEAVYHLLKNLDLQEETDTLREQMDATNSETKIKRLSKRLKLVESFLESGNRPEWMIM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLSAPDIIVRNEKRML
QESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLRLHQCGLPKRMALELFKPFIFSRLQRLGLSTTIKAAKKMVERETPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQLE
ARALMMATNNVLSPASGEPIIGASQDVVLGLYYTSLALENRRGEGMNFSDVAEVHRAYES
GQVDLHAKVSVRIHEVIQDDQGHRTEGTRRFDTTVGRALLYDIVPAGLPFELVDRDMTKR
AISEMIDQCYRRLGLKATVIFADQIMYLGFRMSTRAAVSIGMEDMVVPTEKETILTAAES
EVKDIEDQYASGLVTNGERYNKVVDIWSRTNDEVATAMMDKLGKETVTDREGNQRLQKST
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVSQDLVVTADDCGTHRGLRMTPLIEGGDVVEGLGERV
LGRVVAQDVVQPGTGEVLVDQGTLLDERLVEKIESEGVDEVWVRSPITCEIRHGVCSTCY
GRDLARGHRVNVGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAISNVQVKSAGSVR
LHNLKTVAHHSGNLVAVSRSGEITVIDEAGRERERYKVPYGATIAAADEEAVEAGQIVAT
WDPHTHPIITEVKGRLKFYDFVEGVTVNRETDEVTGLSSLVVTDPKTRGNGEHTRRSTGE
KVAYKDLRPLIKLVDEDGNDLNLAGTDIPANYFLPAGAIVSVDDNAEVDVGDVIARIPQE
SSKTRDITGGLPRVADLFEARKPKEPAILAEVSGTVSFGKDTKGKQRLVITTPEGEHYEE
LIPKWRNVTVFEGEHVEKGEVIADGEPNPHDILRLLGVTELAAYMVKEIQDVYRLQGVKI
NDKHIEVISRQMLRKVEIRDGGDTRYLRGEQADWARVEEENERLVEMGKTPARYERQLLG
ITKASLATESFISAASFQETTRVLTDAATRGARDDLRGLKENVIVGRLIPAGTGYAYHQD
RQRQRREGATPMIPMAPQFGLNAPAPAPDQADLPEQQ
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctattgaatctgttcaagcagccgggcgcccagctcgacgattttgacgcg
atccggatcgggctcgcttcgccggagaagatccgctcgtggtccttcggcgaggtcaaa
aagcccgaaaccatcaactaccgcacgttcaagccggagcgggacgggcttttctgcgcc
aagatcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctcaag
caccggggcgtggtctgcgaaaagtgcggggtggaggtcaccctggccaaggtccggcgc
gagcgcatgggccacatcgagctggccagcccggccgcgcatatctggttcctcaagtcg
ctgccctcgcgcatcggcctgctgctggacatgaccctgcgggacatcgagcggatcctc
tacttcgaggcgttcgtggtcatcgagcccaacatgaccccgctcaccaagcatcagctg
ctcagcgacgagcagtatctggatgccatggagcagtacggcgatgagttcgacgcccgc
atgggcgccgaggcggtctatcacctgctcaagaatctggatctgcaggaagagaccgac
accctgcgcgagcagatggatgccaccaactccgagaccaagatcaagcggctgtccaag
cgcctcaagctggtggagtcgttcctcgagtcgggcaaccgccccgagtggatgatcatg
accgtcctgccggtgctgccaccggatctgcggccgctggtgccgctggatggtggccgg
ttcgccacctcggatctcaacgacctctatcgtcgggtgatcaaccgcaacaaccggctg
cgccggctgctggatctgtccgcgccggacatcattgtccgcaacgaaaagcgcatgctc
caggaatccgtggacgcgttgctggacaacggccgccgcggtcgggccatcaccggcacc
aacaagcgcccgctcaagtctctggcggacatgatcaagggcaagcagggccgcttccgg
cagaacctgctgggcaagcgcgtggactactccggccgctccgtcatcgtggtgggcccc
accctgcgactgcaccagtgcggtctgcccaagcgcatggcgctggagctgttcaagccg
ttcattttctcgcgtctgcagcggctgggcctgtccaccaccatcaaggcggccaagaag
atggtggagcgcgagacccccgaggtatgggacatcctcgaggaagtcattcgcgagcac
ccggtcatgctcaaccgggcgccgaccctgcatcgactgggcattcaggcctttgagccg
gtcctcatcgagggcaaggccatccagctgcatccgctggtctgcccggcgttcaacgct
gactttgacggcgaccagatggccgtgcacgtgccgctgtccctggaagcccagctggaa
gcccgggcgctgatgatggccaccaacaatgtgctgtcgccggcgtcgggtgagcctatc
atcggtgcctcccaggacgtggtgctggggctgtactacaccagcctggcgctggagaac
cgtcggggtgagggcatgaacttctccgacgtggccgaagtgcatcgcgcctacgagagc
ggccaggtggatctgcatgccaaagtcagcgtgcgcattcacgaggtcatccaggacgat
cagggccatcgcaccgagggcacccggcggttcgacaccactgtcggccgggccctgttg
tacgacatcgtgccggcggggctgcccttcgagctggtggaccgtgacatgaccaagcgg
gccatctccgagatgatagaccagtgctaccggcggcttggcctcaaggccacggtgatc
ttcgccgaccagatcatgtatctgggcttccgcatgtccacccgggcggcggtgtccatc
ggcatggaagacatggtggtccccaccgaaaaggagaccattctcaccgctgccgagtcc
gaggtgaaggacatcgaggatcagtacgcctccggtctggtcaccaacggtgagcgctat
aacaaggtggtggacatctggtcgcggaccaacgacgaagtcgccacggcgatgatggac
aagctcggcaaggagacggtgaccgaccgcgagggcaaccagcggctgcagaagtccacc
aactccattttcatgatggcggactccggtgcccgaggttcagcagcccagatccggcag
ctggcgggcatgcgcggcctcatggccaagcccgacggctccatcatcgaaacgccgatt
accgccaacttccgtgaggggctgaacgtcctgcagtacttcatctccacccacggcgcc
cgtaagggtctggcggacacggcgctcaagaccgccaactccggttatctgacccggcgg
ctggtggacgtttcccaggatctggtggtgaccgccgacgactgcggcacccatcgcggc
ctgcgcatgacccccctgatcgagggtggcgacgtggtggaaggcctcggcgagcgggtg
ctgggccgcgtggtggcccaggatgtggtccagccgggcaccggcgaggtgctggtggat
cagggcacgctgctggacgagcgcctggtggaaaaaatcgaaagcgagggcgtcgacgag
gtctgggtgcgctcacccattacctgcgaaatccgccatggtgtctgctccacctgctat
ggccgcgatctggcccgcgggcatcgggtaaatgtgggcgagtcggtgggcgtcatcgcg
gctcagtccatcggcgagccgggcacccagctcaccatgcggaccttccacatcggtggt
gccgcctcccgggcggcggcaatcagcaacgtgcaggtgaagtccgccggcagcgtgcgg
cttcacaacctcaagaccgtggctcatcactccggcaacctggtggcagtgtcccgctcc
ggcgagatcaccgtcatcgatgaggcgggtcgcgagcgcgagcgctacaaggtgccctac
ggcgccactatcgccgccgcggacgaggaagccgtggaagccggtcagatcgtggccacc
tgggatccccacacccacccgatcatcaccgaggtgaagggtcgcctgaagttctatgac
ttcgtcgagggggtgaccgtgaaccgggagaccgacgaggtcaccggtttgagcagcctg
gtggtcaccgaccccaaaacccgtggcaatggcgagcacacccgccgcagcaccggtgag
aaggtggcctacaaggacctgcgaccgctgatcaagctggtggacgaggacggtaacgac
ctcaacctggcgggcaccgatattccggccaattactttctgccggcgggcgccatcgtc
agcgtcgatgacaacgccgaagtggatgtgggcgacgtcatcgcccgtatcccgcaggag
tcgtccaagacccgtgacatcaccggtggtctgccccgggtggcggacctgttcgaggcc
cgcaagcccaaggagccggccatcctcgccgaggtttccggcaccgtgtcctttggcaag
gacaccaagggcaagcagcgtctggtgatcaccacacccgagggtgagcattacgaagag
ctcattcccaagtggcgcaacgtcacggtgttcgagggtgagcacgtcgagaagggtgag
gtgattgccgatggcgaaccgaacccccacgacattctgcgtctgctgggcgtgaccgag
ttggcggcttacatggtcaaggagatccaggacgtctaccgtctccagggcgtgaagatc
aacgacaagcacatcgaggtgatcagtcgccagatgctgcgcaaagtcgagattcgcgat
ggcggcgacacccgctacctgcgtggcgagcaggccgactgggcccgggtcgaggaagag
aacgagcggctggtggagatgggcaagacgccggcccgctacgagcgccagctgctgggt
atcaccaaggcatccctggcgacggagtcgttcatctcggcggcctctttccaggagacc
actcgggtgcttaccgacgccgccacccgcggtgcccgggacgatctccgcggtctcaag
gagaatgtcatcgtcgggcgcctgattccggcgggcacgggctatgcctaccaccaggat
cgtcagcgtcagcggcgcgaaggggcgaccccgatgattccgatggcaccgcagttcggc
ctgaacgcaccggcccctgcgccggatcaggcagacctgccggaacagcagtaa
DBGET
integrated database retrieval system
