Sphingopyxis sp. J-6: V6U71_02105
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Entry
V6U71_02105 CDS
T10764
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6U71_02105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjj03019
]
V6U71_02105
03009 Ribosome biogenesis [BR:
spjj03009
]
V6U71_02105
Enzymes [BR:
spjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6U71_02105
Messenger RNA biogenesis [BR:
spjj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6U71_02105
Ribosome biogenesis [BR:
spjj03009
]
Prokaryotic type
rRNA helicases
V6U71_02105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XMG40886
LinkDB
All DBs
Position
complement(392924..394756)
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AA seq
610 aa
AA seq
DB search
MPFEHLSPVLADALTARGYEALTPVQTHVTEAEAKDRDLLVSAQTGSGKTVAFGLAMADQ
LIEDGRLPFATSPLALIVAPTRELALQVSRELGWLYGKAGARIATCVGGMDASKERRALN
QGVQIVVGTPGRLRDHLERGALDLSALRVAVLDEADEMLDMGFRDDLEEILDGTPETRRT
LLFSATLPKPIVQLAKRYQRDALRISTVGEDRGHGDITYQVVTVAPADIEGAVINLLRLH
EAETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNHALQALRDRRARVCVATD
VAARGIDLPTLSLVIHVEIPRDAEALQHRSGRTGRAGKKGTAVLIVPYPRRRRVDGMLRG
ARINAEWMEAPTAADVRQKDQERLIEKLLAPVEHEPEDLELAERLMAERTPEDIAASLVR
AHRALMPPPEDLLDNSPRGRERPERGERGERFERPERGSADRRDGFEDSVWFRLNIGRHQ
NADPRWILPLLCRRGHVSKNEIGAIRIGPKETMFNIPRGIADRFIEAVQRSANADGEDDS
GVAITPAPDGPTYPPRRDKGGRDGAPRNTLGRAPGGDRAGPRGPRGPGGPGGNERYKPKP
YGQRSPRRPK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgaacacctctcgcccgtccttgcggacgccctcaccgcgcgcggctatgaa
gcgctcacccccgtccagacgcatgtcaccgaagccgaggccaaggaccgcgacctgctc
gtctccgcgcagaccggctcgggcaagaccgtcgccttcggcctcgcgatggccgatcag
ctcatcgaggatggccgcctgcccttcgccacctcgccgctcgcgctgatcgtcgcaccg
acgcgcgagctggccttgcaggtcagccgcgaactcggctggctctatggcaaggccggc
gcgcgcatcgcgacctgcgtcggcggcatggacgccagcaaggaacgccgcgcgctgaat
cagggcgtgcagatcgtcgtcggcacgccgggacgcctgcgcgaccatctcgaacgcggc
gcgctcgacctctcggcgctacgcgtcgcggtgctcgacgaggccgacgagatgctcgac
atgggctttcgcgacgaccttgaggaaatcctcgacggcaccccggaaacgcgccgcacg
ctcctgttctcggcgacgcttccgaaaccgattgtccagctcgccaaacgctaccagcgc
gatgcgctgcgcatttccaccgtcggcgaagatcgcggccatggcgacatcacctatcag
gtcgtaaccgtcgcccccgccgatatcgaaggcgccgtcatcaatctgctccgcctccac
gaagccgaaaccgcgatgctgttctgcgcgacgcgcgacaatgtccgccgcctccacgcc
agcctcgtcgagcgcggtttcgccgccgtcgcgctgtcgggcgagcacagccagaacgag
cgcaaccatgcgctgcaggcgctgcgcgatcgccgtgcgcgcgtctgcgtcgcgaccgac
gtcgcggcgcgcggtatcgacctgccgacgctcagcctcgtcattcatgtcgaaatcccg
cgcgatgccgaagcgctccagcaccggtcgggccgcaccggccgcgccggcaaaaagggc
actgcggtactcatcgttccctatccgcgccgccgccgcgtcgacggcatgctgcgcggc
gcgcgcatcaacgccgaatggatggaggctccgacggccgccgacgtccggcagaaggat
caggaacggctgatcgagaaactgctcgcgcccgtcgagcatgagcccgaagatcttgaa
ctcgccgagcgcctgatggccgagcgcacccccgaagatatcgccgcctcgctcgtccgc
gcgcaccgtgcactgatgccgccgcccgaggatctgctcgacaacagcccacgcggccgc
gagcggcccgaacgcggcgagcgcggtgagcggttcgagcgccctgaacgcggcagcgcc
gaccgccgcgatggtttcgaggacagcgtctggttccggctcaatatcggccgccaccag
aatgccgatccgcgctggatcctgccgctgctgtgtcgccgcggccatgtgagcaagaac
gagatcggcgcgatccgcatcggtcccaaggaaacgatgttcaacatcccgcgcggcatc
gccgaccggttcatcgaagccgtgcagcgcagcgccaatgccgatggcgaggacgacagc
ggcgtcgcgatcacccccgcacccgacggccccacctatccgccgcgccgcgacaagggc
ggacgcgatggcgccccgcgcaacacgctgggccgggcgccgggcggtgaccgtgccggc
ccgcgcggaccgcgtggccccggcggcccgggcggcaacgaacgctacaagcccaagccc
tacggccagcgcagcccgcgccgcccgaaataa
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