Sphingopyxis sp. J-6: V6U71_08865
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Entry
V6U71_08865 CDS
T10764
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spjj Sphingopyxis sp. J-6
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spjj03032
]
V6U71_08865 (topA)
03400 DNA repair and recombination proteins [BR:
spjj03400
]
V6U71_08865 (topA)
Enzymes [BR:
spjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V6U71_08865 (topA)
DNA replication proteins [BR:
spjj03032
]
Prokaryotic type
DNA Topoisomerases
V6U71_08865 (topA)
DNA repair and recombination proteins [BR:
spjj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V6U71_08865 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Motif
Other DBs
NCBI-ProteinID:
XMG42160
LinkDB
All DBs
Position
1851561..1854113
Genome browser
AA seq
850 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGRDFKVLASYGHVRDLPPKDGSVDPDDGFAMQWQLYPDKAK
RLKEIQDAAKTADRLILATDPDREGEAISWHVQELLRAKKALPQAVDRVTFNAITKQAVT
DAMAHPRALDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVTLRMVVERE
REIEAFVAQQYWSVTGLFEMGGTPFRARLSRWRGDKIERLTIGTEADARAAEADVKAGHF
TVDAVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYEDGAITYMRTDGVQ
MDGSAISAARKAIADRYDGGYVPDQPRQYQTKAKNAQEAHEAIRPTDFSKDKAGSGDHAR
LYELVWKRALASQMASARLERTSIDLSDGTGKTVLRATGQVVKFPGFLALYDEGRDDSGD
DEDARLLPAMSKGDAPAKTGVEVESHETQPPPRYSEASLVKKMEELGIGRPSTYASIVQV
LKDRGYVTVEKNRFIPEESGRLLTAFLERFFERYVEYDYTAGLEEELDDVSGGRAQWQAV
LDRFWRDFKPRTGEVMEQKPSEITAALDEFLGPYLFPDKGDGTDPRLCPNCGTGRLALRG
GKFGPFIACSNYPDCKFTRKFAQPGGSDAGDTGPETMGTDPDSGLEVTKRSGRFGPYIQL
GDGKEAKRSSIPKDIPGEDFDLDYALRLLSLPREVGVHPESGKPIMAGLGRYGPYLLHDG
KYAKLTGTAEIFDIGMNAAVVRIAEAAAGGGRGRTKAEPLNTFGPHPTSGGEMKLMEGRF
GPYVTDGTTNATLPKTADPATLTLEEAIALIDARAAKGPAKGKKKAAPKKKAAAKKPAAK
KAPAKKAAAE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggtaattgtggaatcgcccgccaaggcgaagacgatcgagaaatatcttggt
cgcgattttaaggtgctggcgagttacggccatgttcgtgatctgccgccgaaagacggt
tcggtcgatcccgacgacggtttcgcgatgcagtggcagctttatcccgacaaggcgaag
cggctgaaggaaatccaggatgcggcgaagactgccgatcgactgatcctcgcgaccgac
cctgatcgcgagggcgaggcgatcagctggcatgtccaggagttgctgcgcgcgaagaaa
gcgctgccgcaggcggtcgaccgcgtgaccttcaacgcgatcaccaagcaggcggtgacc
gacgcgatggcgcacccgcgcgcgctcgacgacgatctgatcgacgcctatcgcgcccgc
cgcgccctcgactatctcgtcggcttcaccctgtcgccggtgttgtggcgcaagctgccc
ggcgccaagtcggcgggccgcgtccagtcggtcacgctgcgcatggtcgtcgagcgcgag
cgcgagatcgaggccttcgttgcgcagcaatattggtcggtcaccggcctgttcgaaatg
ggcggcacgccgttccgggcgcggctttcgcgctggcgcggcgacaagatcgaacggttg
acgatcggcaccgaagccgacgcgcgcgccgccgaggccgatgtgaaggccgggcatttc
accgtcgatgcggtcgagaccaagccgctgacgcgcaatccgccgccgcccttcaccacc
tcgacgctgcagcaggaggcggcgcgcaagctcggcttctcggcgagccacacgatgcgg
atcgcgcaggcgctctacgaggacggcgcgatcacttatatgcggaccgacggcgtccag
atggacggcagcgcgatcagcgcggcgcgcaaggcgatcgccgaccgctatgacggcggt
tatgtccccgaccagccgcgccagtatcagaccaaggcgaagaatgcgcaggaagcgcac
gaggcgatccgcccgaccgatttttcgaaggacaaggcgggcagcggcgaccatgcgcga
ctgtacgagctggtttggaagcgcgcgctggccagccagatggcttcggcgcggctcgaa
cgcaccagcatcgacctcagcgacggcaccggcaagacggtgctgcgcgcgacgggtcag
gtcgtgaaattccccggcttcctcgcgctttacgacgagggacgcgacgacagcggcgac
gatgaggacgcgcgcctgctgcccgcgatgagcaagggcgatgcgccggcgaagaccggc
gtcgaggtcgaaagccacgagacgcagccgccgccgcgctattcggaagcgagcctcgtc
aagaagatggaggagctcggcatcgggcgtccgtcgacctatgcctcgatcgtccaggtg
ctcaaggaccgcggctatgtgaccgtcgagaagaaccgcttcattcctgaagaaagcggg
cggctgctgactgccttcctcgaacgcttcttcgaacgctatgtcgaatatgactatacc
gccgggctcgaggaagagctcgacgacgtgtccggcggccgcgcccagtggcaggcggta
ctcgaccgcttctggcgcgatttcaagccgcgcaccggcgaggtgatggagcagaagccg
tcggagatcaccgcggcgctagacgaatttcttggcccctatctctttcctgacaagggc
gacggcaccgatccgcgcctctgccccaattgcggcaccgggcggctggcgctgcgcggc
gggaagttcggaccgttcatcgcctgcagcaattatcccgactgcaagttcacgcggaaa
ttcgcgcagccgggaggcagcgacgcgggcgacacggggccggagacgatggggaccgat
cccgacagcgggcttgaggtcacgaagcgcagcgggcgtttcggcccctatatccaactc
ggcgacggcaaggaggcgaagcggtcgtcgatccccaaggacattccgggcgaggatttc
gatctcgactatgcgctgcggctcctaagcctgccgcgcgaggtcggcgtgcatcccgaa
agcggcaagccgatcatggcggggctcgggcgctatggcccctatctgctccacgacggc
aaatatgcgaagctgaccggtacggccgaaatcttcgacatcggcatgaacgctgcggtc
gtccggatcgccgaggcggcggctggcggcgggcgcgggcggaccaaggccgaaccgctc
aacactttcggaccacacccgacgagcggcggcgagatgaaattgatggaagggcgtttc
ggtccctacgtcaccgacggcacgaccaacgcgaccttgcccaagaccgccgatccggcg
acgctgacgctcgaggaagcgatcgcgctgatcgatgcgcgcgcggccaaggggccggca
aagggcaagaaaaaggcagcgccgaagaaaaaggccgctgcgaagaagcctgcggccaag
aaggcgccggcgaaaaaggctgcggcggaatag
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