Sphingopyxis sp. J-6: V6U71_09020
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Entry
V6U71_09020 CDS
T10764
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6U71_09020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjj03019
]
V6U71_09020
03016 Transfer RNA biogenesis [BR:
spjj03016
]
V6U71_09020
Enzymes [BR:
spjj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V6U71_09020
Messenger RNA biogenesis [BR:
spjj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V6U71_09020
Transfer RNA biogenesis [BR:
spjj03016
]
Prokaryotic type
tRNA degradation factors
V6U71_09020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
DUF6211
Motif
Other DBs
NCBI-ProteinID:
XMG42190
LinkDB
All DBs
Position
1887624..1889921
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AA seq
765 aa
AA seq
DB search
MARKQHTGLPSPEQILRFIEESKDAVGKREIAKHFALHGNEKIALKALLKDMTDEGLVDL
APGRAFHKHGGLPRVTVLRVAAIEGSIVWAVPDRWEAAGPAPRLRVMEQGRKGALGVGDR
ILARTEERGSGHVAHPMKRLQASAEMVIGVLVEDVGPGGKPMIWLRPADKRARYDFAVAD
KGNADIGDLVRAELTGRGPAIKAKVIDRIGDPFAPRSLSMIAIARHEIPHVFGPETLAEA
EKAAKLPLTPDGREDLRDLPIVAIDPVDARDHDDAVWAVPDEDPGNKGGFRAIVAIADVS
YYVRPDGALDREARRRGNSVYFPDQVVPMLPETLSAGVCSLKAGEDRAAMACHLVIDKHG
KVTSWRFTRALVRLRANIAYEHAQAAYDADEPREGWDADVLPALRNLWASWTLLAKARAA
RDPLDLELPERQVILDEQGGIAEIRVRDRLDAHRLIEDYMIAANVAAAKALEAKKSPVMY
RIHEPPSREKLVSLKDYLETFEQSFALGQVITPAVFNRLIDGFSGDDRLPEIMQAILRSQ
TQAYYGPANAGHFGLALGSYAHFTSPIRRYADLIVHRALVDSYRLEVPGKPKDLPARTGL
GDEDGKGLSRIGEAISALERRAMEAERETVDRYVAAYLATKTGEIVTARITGVQPFGFFA
TVDGLGGDGLVPVSTLGSERFFYDEAARTLDSEHGRVSYTVGQRLDLRLLDANPISGALR
FELPDAPEGGFRNRPPRRDGVKKAGKHMVGKRGRPANIKHKGRKR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaaacaacacaccggacttccttcgcccgaacagattctgcgttttatcgaa
gagagcaaggatgcagtcgggaagcgcgagatcgccaagcattttgcgctgcacggtaac
gagaagatcgcgctgaaggctttgctcaaggatatgaccgacgaggggctcgtcgatctc
gcccccggccgcgcctttcacaagcatggcggcctcccgcgcgtcaccgtactgcgcgtc
gcggcgatcgagggcagcatcgtctgggcggttcccgatcgatgggaggctgccggcccg
gcgccgcgcctccgcgtgatggagcagggacggaagggggcgctcggggtcggcgaccgt
atccttgcccgcaccgaggaacgtggcagcggccatgtcgcgcatccgatgaagcggctg
caggcgagcgccgaaatggtgatcggtgtgctcgtcgaggatgtcggccccggcggcaag
ccgatgatctggctgcgccccgccgacaagcgcgcgcgctacgactttgccgtcgccgac
aagggcaatgccgatatcggcgatctcgtccgcgccgaactgaccgggcgcgggccggcg
atcaaggcgaaggtcatcgaccgcatcggcgaccccttcgcgccgcggtcgctcagcatg
atcgcgattgcgcggcacgagataccgcatgtcttcggtcccgaaaccctcgccgaggct
gaaaaggcggcgaagctgccgctgacccccgacgggcgcgaggatctgcgcgacctgccg
atcgtcgcaatcgaccccgtcgatgcgcgcgaccatgacgatgccgtctgggcggtcccc
gacgaggacccgggcaacaagggcggctttcgcgccatcgtcgcgatcgccgacgtcagc
tattatgtccgccccgacggtgcgctcgaccgcgaagcgcgccgacgcggcaacagcgtc
tattttcccgaccaggtcgtcccgatgctgcccgaaacgctgtcggcgggggtttgttcg
ctgaaggccggggaggatcgcgcggctatggcgtgccatctcgtcatcgacaagcacggc
aaggtgacgtcatggcgtttcacgcgtgcgctcgtccggctgcgtgccaacattgcctac
gaacatgcgcaggcggcctatgacgccgacgagccccgcgaggggtgggatgccgatgtc
ctgccggcgctccgcaacctctgggcaagctggacgctgctcgcgaaagcgcgcgccgcg
cgcgatccgctcgacctcgaactgcccgaacggcaggtgatcctcgacgaacagggcggc
atcgccgaaatccgcgtccgcgaccgcctcgacgcgcaccggttgatcgaggattatatg
atcgcggccaatgttgcggcggcaaaggcgctcgaggcgaagaagtcgccggtgatgtat
cgcatccacgagccgccgagccgcgagaagctcgtcagcctgaaggactatctcgaaact
ttcgagcagagcttcgcattggggcaggtgattacgcccgccgtgttcaaccgcctgatt
gacggcttttccggggacgaccggctgcccgagatcatgcaggcgattttgcgcagccag
acgcaggcctattatggccccgccaacgccggccatttcggccttgcgctcggcagctac
gcgcatttcacctcgccgatccgccgctacgccgatctgatcgtccatcgcgcactcgtt
gactcttatcgcctcgaagtgcccggcaagccgaaggatctgcccgcgcgcaccggactc
ggcgacgaggacggcaaggggctgtcgcggatcggcgaagcgatcagcgcgctcgaacgc
cgcgcgatggaggccgagcgcgagaccgtcgaccgctatgtcgcggcctatctggcgacc
aagaccggcgagatcgtgacggcgcggatcaccggcgtccagcccttcggctttttcgcc
acggtcgacggactcggcggcgacggtctggttccggtgtcgacgctgggcagcgagcgc
tttttctatgacgaggcggcccggacgctcgacagcgagcacgggcgggtgagctatacg
gtcgggcagcggctcgatctgcggctgctcgatgccaacccgatcagcggcgcgttgcgt
ttcgaactgcccgatgcgcccgagggcggtttccgcaaccggccgccgcggcgcgacggg
gtgaagaaggccgggaagcatatggtcggcaagcgcgggcgtccggcgaatatcaagcac
aagggacggaagcgctga
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