Sphingopyxis sp. J-6: V6U71_09755
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Entry
V6U71_09755 CDS
T10764
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03420
Nucleotide excision repair
spjj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6U71_09755
03430 Mismatch repair
V6U71_09755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spjj03400
]
V6U71_09755
Enzymes [BR:
spjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6U71_09755
DNA repair and recombination proteins [BR:
spjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6U71_09755
MMR (mismatch excision repair)
Other MMR factors
V6U71_09755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XMG42641
LinkDB
All DBs
Position
complement(2038731..2041037)
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AA seq
768 aa
AA seq
DB search
MPPASIPDLPPPDPSDPPYLHGLNGPQRQAVLTTEGPVLMLAGAGTGKTAALTARLAHII
ATRRAWPSEILAVTFTNKAAREMRERIGRMIGDAVEGMPWLGTFHSIAAKMLRRHAELVG
LQSNFTILDTDDQLRVLKQLIQAEGLDEKRWPARQLAGLIDKWKNRGLTPPDLDAADKEA
YADGKGQHFYALYQARLKTLNACDFGDLLLHMLVILKNHRDVLEQYQERFKYILVDEYQD
TNASQYLWLRLLAQARKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGATVIRLEQNYR
STPQILAAASALIAQNSGRLGKTLWTELDPGDKLRVVGVWDGPEEARRIGEELETLQHRK
VSLDRTAILVRAQFQTREFEDRFIAIGMPYRIVGGFRFYERAEIRDALAYLRLVQSSADD
LAFERIVNVPKRGLGDKALARIHQYARHERAPLFHAASRITETDELTPQARRQLANFVAQ
MRNWQGKANELSHPELTQLILDESGYTAMLQADRSVEAAGRLENLSELVRAMEEYESLEA
FLEHVSLVMDRDQNDDTETVTIMTIHAAKGLEFDHVFLAGWEDGVFPSQRSMDEGGTASL
EEERRLAYVAITRARRRASIYHAANRRIYGQWMSSIPSRFIGEIPQEHIESENSFGGGQS
LWRANWSAQGDPFAHVAERQPARTMTRGPAWQRAVAQSSTITRAPAPSEKGPAASVGAKP
RSDLAIGMRVFHEKFGYGEIIDIDGNKLEVEFEQAGSKRVLDGFVKLA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctgcctcgatacccgacctgccgccgcccgacccgtcggacccgccctatctg
cacgggctgaatgggccgcagcggcaggctgtgctgacgaccgaaggcccggtgctgatg
ctcgcgggggccggcaccggcaagaccgcggcgctcaccgcgcggctcgcgcatatcatc
gcgacacgccgggcctggccgtcggagatcctcgcggtcaccttcaccaacaaggcggcg
cgcgagatgcgcgaacgaatcgggcggatgatcggcgatgcggtcgagggcatgccgtgg
ctcggcaccttccacagcatcgcggcgaagatgctgcggcggcacgccgaactcgtcggg
ctgcagagcaatttcaccattctcgacaccgacgaccagcttcgcgtgctcaaacagctc
atccaggccgaggggctcgacgagaagcgctggccggcgcgccagctcgcggggctgatc
gacaagtggaagaaccgcggcctcaccccgcccgatctcgatgcggccgacaaggaagcc
tatgccgacggcaaggggcagcatttctacgcgctctatcaggcgcggctgaaaacgctc
aacgcctgcgacttcggtgacctgctgctccacatgctggtgatcctgaaaaaccaccgc
gacgtgctcgaacaatatcaggagcgcttcaaatatatcctcgtcgacgaatatcaggac
accaatgccagccagtatctctggctccgcctgctcgcacaggcgcgcaagaatatctgc
tgcgtcggcgacgacgaccagtcgatctattcgtggcgcggtgccgaggtcgcaaacatc
ctgcgcttcgaaaaggacttcccgggcgcgacggtgatccgcctcgaacagaattatcgc
tcgacgccgcagatccttgccgctgcctcggcgctgatcgcgcagaacagcggccgcctc
ggcaagacgctgtggaccgaactcgatccgggcgacaagctccgcgtcgtcggcgtctgg
gacgggcccgaggaggcgcggcggatcggcgaggagctggagacgctccagcaccgtaag
gtcagcctcgatcgcaccgcgatcctcgtccgcgcccagttccagacgcgcgagttcgaa
gaccgcttcatcgcgatcggtatgccgtaccgcattgtcggcggtttccgcttctacgaa
cgcgccgaaatccgcgacgcgcttgcctatctccgcctcgtccagtcgagcgccgacgat
cttgcgttcgagcgcatcgtcaacgtccccaagcgcgggctcggcgacaaggcgctggcg
cggatccaccaatatgcgcgccacgagcgcgcgccgctcttccacgccgcctcgcggatc
accgaaaccgacgaactgacgccgcaggcgcgccgccagctcgcgaatttcgtcgcgcag
atgcggaactggcagggcaaggcgaacgaactatcgcatcccgaactcacccagctcatt
ctcgacgaatcgggctataccgcgatgctgcaggccgaccgcagcgtcgaggctgcgggc
cgcctcgaaaacctgtccgaactcgtccgcgcgatggaagagtatgaatcgctcgaagcc
ttcctcgagcatgtcagtctcgtgatggaccgcgaccagaatgacgacaccgagaccgtc
accatcatgacgatccacgccgccaaggggctggaattcgaccatgtgttcctcgcgggc
tgggaggatggggtgtttccgtcgcagcgatcgatggacgagggcggcaccgccagcctc
gaggaagagcgccgcctcgcctatgtcgcgattacccgcgcccgtcggcgcgcgagcatc
tatcatgccgcgaaccggcgtatctatggccagtggatgagcagcatcccgagccgtttc
atcggcgaaatcccgcaagagcatatcgagagcgagaacagcttcggcggcgggcaaagc
ctgtggcgcgccaactggtcggcgcagggcgatcccttcgcccatgtcgccgaacgccag
ccggcccgcacgatgacgcgcggtccggcctggcagcgtgcggttgcgcaatcctcgacg
atcacccgcgcgcccgcgcccagcgaaaaaggccccgccgcctcggtcggcgccaagccg
cgcagcgacctggcgatcggtatgcgcgtcttccacgagaaattcgggtacggcgagatc
atcgacatcgacggcaacaagctggaggtggagttcgagcaggccggcagcaagcgggtg
ctcgacggctttgtgaagctcgcctga
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