Sphingopyxis sp. J-6: V6U71_10255
Help
Entry
V6U71_10255 CDS
T10764
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6U71_10255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjj03019
]
V6U71_10255
Messenger RNA biogenesis [BR:
spjj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V6U71_10255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
RNase_J_C
RsbRD_N
Motif
Other DBs
NCBI-ProteinID:
XMG42424
LinkDB
All DBs
Position
complement(2140841..2142475)
Genome browser
AA seq
544 aa
AA seq
DB search
MTNPGKELLFLALGGSGEIGMNANLYGCDGKWIMADLGVTFGSHDYPGIDIVMPDLEFIE
DRKKDLLGIVLTHGHEDHIGAIPYLAADLGVPLYANRFTAGLIAHKLAEEGLEKEVEIKV
VDIDASFRIGPFGIRLVPLAHSILEMSAVVIDTPYGRVFHTGDWKLDEEPILGQPATAAA
LTAIGDEGVDVLVCDSTNAFNAEASGSEGGLREGLTQAVGAAKGRVVVTTFASNAARLAT
LGAVAKATGRTLCVAGRSLDRILGVARSVGYLKDFPPTVDFDEAMRLPRDKLMVIATGGQ
GEPRAALARMASDGHQIKLEAGDTVVFSSKQIPGNEVAIGRIMNQLAAKDVLTVTEKQAH
IHVSGHPGQPELAALYGWLRPKLVVPVHGEIRHMHEQARFALEQGVPDALIQENGDLVRL
SPGPAKIIERVRSGRLILDGDVILPADGETINERRKLALNGQISVAVIFSDKRFVDSAVS
YRGVPVEDERETFVDELREAAEQAATGPARDEEKLREAIRLGVRRVATNWTGKKPIVDVM
LVDI
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaccccggcaaggagttgcttttcctcgcattggggggctcgggcgagatcggc
atgaacgccaatctctatggctgcgacggcaaatggatcatggccgaccttggcgtgacc
tttggcagccacgattatcccggcatcgacatcgtcatgcccgacctcgaattcatcgag
gaccgcaagaaggatttgctcggcatcgtgctgacccacgggcacgaggaccatatcggc
gcgatcccttatctggccgccgaccttggcgtgccgctctatgccaaccgcttcaccgcg
gggctgatcgcgcacaagcttgccgaggaagggctggagaaagaggtcgagatcaaggtc
gtcgatatcgacgccagtttccggatcgggcccttcggcatccgtttggtcccgctggcg
cattcgatcctcgaaatgagcgcggtggtgatcgacacgccctatggccgcgttttccac
accggcgactggaagctcgacgaggagccgatcctcgggcagccggcgaccgccgcggcg
ctgaccgcgatcggcgacgagggcgtcgatgtgctcgtctgcgattcgaccaatgcgttc
aacgccgaggcctcgggcagcgagggcgggctgcgcgaggggctgacgcaggcggtcggc
gcggcaaagggcagggtggtcgtcaccaccttcgcctcgaacgccgcgcggctggcgacg
ctgggcgcggtcgccaaggcgacggggcggaccttgtgcgtcgcggggcgctcgctcgac
cgcatcctcggggtcgcgcgctcggtgggctatctcaaagattttccgccgacggtcgat
ttcgacgaggcgatgcggctgccgcgcgacaagctgatggtgatcgccactggcgggcag
ggcgaaccgcgcgcggcgctggcgcgcatggcttccgacgggcaccagatcaagctcgag
gcgggcgataccgtcgtcttttcgtcgaagcagattcccggcaacgaggtcgcgatcggg
cggatcatgaatcagctcgcggcgaaagacgtgctgacggtgaccgaaaagcaggcgcat
atccacgtcagcggccatccggggcaacccgaacttgcggcgctctatggctggctcagg
cccaagctggtcgtgccggtgcacggcgagatccgtcatatgcacgaacaggcgcgcttt
gcgctcgaacaaggcgtgcccgacgcactgattcaggaaaatggcgatctcgtccgcctg
tcgccggggcctgcgaagattatcgagcgcgtgcgttcggggcggcttatcctcgacggc
gacgtgatccttcccgccgacggcgagacgatcaacgaacggcgcaagctggcgctcaac
ggccagatttcggtcgcggtgatcttttcggacaagcgcttcgtcgacagcgcggtgagc
tatcgcggcgttccggtcgaggacgagcgcgaaaccttcgtcgacgagctccgcgaagcc
gccgaacaggccgctaccggcccggcgcgcgatgaagagaaactgcgcgaggcgatccgg
ctcggcgtgcggcgcgtcgcgaccaactggacaggcaagaagccgatcgtcgacgtcatg
ctcgtcgatatctga
DBGET
integrated database retrieval system
