Sphingopyxis sp. J-6: V6U71_11365
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Entry
V6U71_11365 CDS
T10764
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03030
DNA replication
spjj03430
Mismatch repair
spjj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6U71_11365
03430 Mismatch repair
V6U71_11365
03440 Homologous recombination
V6U71_11365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spjj03032
]
V6U71_11365
03400 DNA repair and recombination proteins [BR:
spjj03400
]
V6U71_11365
Enzymes [BR:
spjj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6U71_11365
DNA replication proteins [BR:
spjj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6U71_11365
DNA repair and recombination proteins [BR:
spjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6U71_11365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DNA_pol3_delta2
DUF3646
DNAX_ATPase_lid
AAA
RuvB_N
AAA_5
AAA_22
AAA_16
AAA_30
AAA_14
AAA_19
PIF1
AAA_assoc_2
AAA_24
AAA_18
AAA_2
Glyco_tranf_2_5
EF-hand_1
DUF815
Cdc6_lid
Motif
Other DBs
NCBI-ProteinID:
XMG38447
LinkDB
All DBs
Position
complement(2352410..2354122)
Genome browser
AA seq
570 aa
AA seq
DB search
MDDSADDDTPMLGMDLPEVTPQPSSGPYRVLARKYRPQTFAELIGQDAMVKTLGNAIARD
RLAHAFLMTGVRGVGKTSTARLIAKALNCIGPDGQGGPTIDPCGVCEPCRAITEGRHIDV
IEMDAASNTGVDDVREIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPPHV
KFLFATTEVNKVPVTVLSRCQRFDLRRITPDMLFAHFSAILQKEGVEAEAPAIWLIANAA
EGSVRDGLSILDQAIAHADLDGGGKIGADQVRAMLGLSDRTAITQLMATILGGDSGGAID
LARAQYALGIEPVAMVRGLMDLTHAITLAKVSRHDDPALAAGDRERIVDWAQKLGFAPLN
RLWQLLLKGHDEVLRANNPLEHLEMLLLRVIYAASMPDPGELAKLLESGNLPTMPLAPPA
PGSAHDGPSDSAAVPIDADAGTEPPPTALTVAQIHQLLEATGSHRLAVQVYDHLRIIELE
PGNIVFAAVPALGGSFARDLGDTLLTQTGSRWHVRPGEGEARPSLGEVRAARVADNGERI
RELPVVKAALAAFPDAKLVEDDDSRHKSQL
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggatgattccgccgacgacgataccccgatgctgggaatggacctgcccgaggtgacg
ccgcagccatcgagcggcccctaccgcgttctcgcccgcaaatatcgcccgcaaaccttt
gccgagctgatcggccaggatgcgatggtcaaaacgctgggcaacgcgatcgcgcgcgac
cggctggcgcatgccttcctgatgaccggggtgcgcggggtcggcaagacgtcgaccgcg
cgcctgatcgccaaggcgctcaactgcatcggacccgacgggcagggcgggccgacgatc
gatccgtgcggggtctgcgagccgtgccgcgcgatcaccgaaggccgccatatcgacgtg
atcgagatggacgccgcgtcgaacaccggcgtcgacgacgtacgcgagattatcgaggcg
gtgcgctacgccgcagtctcggcgcgctacaagatctatatcatcgacgaagtgcacatg
ttgtcgcgtaacgccttcaacgcgcttctgaaaacgctcgaagagccgccgccgcacgtc
aaattcctgttcgcgaccaccgaagtgaacaaggtaccggtgacggtgctgtctcgctgc
cagcggttcgaccttcgtcgcatcacccccgacatgctcttcgcgcatttcagcgcgatt
ttgcagaaggaaggcgtcgaggccgaggcgcccgcgatctggctgatcgccaatgccgcc
gaggggtcggtacgcgacgggctgtcaatcctcgatcaggccatcgcccatgccgatctt
gacggcggcggcaagatcggcgccgatcaggtgcgcgcgatgctcggcctgtcggaccgc
accgcgatcacccaattgatggcgacgatcctcggcggcgacagcggcggcgcgatcgac
cttgcccgcgctcaatatgcactgggcatcgaaccggtggcgatggtgcgcgggctcatg
gacctgacgcatgcgatcacgcttgccaaggtgtcgcgccacgacgatcccgcgctggcc
gccggtgatcgcgagcgcatcgtggattgggcgcaaaaactcgggttcgcgccgctcaac
cgcctctggcagctcctcctcaaggggcatgacgaggtgctccgcgcgaacaacccgctc
gaacatctcgaaatgctgctgctccgcgtgatctatgcggcgtcgatgcccgatccgggc
gagcttgcgaagttgctcgaatcgggaaatctgccgacgatgccgctggcaccgccggcc
ccgggatcggcgcatgacgggccgtccgatagcgccgcagtccctatcgatgcggacgca
ggtaccgaaccgccgccaacagcactgaccgtggcgcaaatccatcaactgctcgaagcg
acaggaagtcataggcttgcggtgcaagtttatgaccatttgcgaattatcgagctggaa
cccggcaatatcgttttcgccgccgttcccgcgctgggcggatcgtttgcccgcgacctc
ggcgacacgctgctgacccaaaccggaagccgctggcacgtccgccccggcgagggcgag
gcgcggccaagtctcggtgaagtccgcgcggcacgcgttgccgacaatggcgaacggatt
cgcgaattgccggtcgtcaaggccgccctggccgcttttcccgatgcgaagcttgtcgaa
gacgacgacagtcgccataagtcccagctatga
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