Sphingopyxis sp. J-6: V6U71_14385
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Entry
V6U71_14385 CDS
T10764
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj00300
Lysine biosynthesis
spjj00470
D-Amino acid metabolism
spjj01100
Metabolic pathways
spjj01110
Biosynthesis of secondary metabolites
spjj01120
Microbial metabolism in diverse environments
spjj01230
Biosynthesis of amino acids
Module
spjj_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
V6U71_14385
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
V6U71_14385
Enzymes [BR:
spjj01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
V6U71_14385
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Paralog
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF6278
Motif
Other DBs
NCBI-ProteinID:
XMG39025
LinkDB
All DBs
Position
complement(2969806..2971035)
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AA seq
409 aa
AA seq
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MKPHGPIPPGFDADDDGMLMIGSDRAEALVDAAGDTPLFVYDSALLTARVAEWRAAMPDN
VQLHFAMKANPYAPLLAYMARLVDGFDVASGGELKAALASGMAAEHISFAGPGKRDRELE
AAIAAGATLNLESAGEAERALSIGARLGVTPKLAVRVNPDFDLKGSGMKMGGGAKPFGVD
ADEVPVLVRRLIDAGADWQGFHIFAGSQALDAAAIAETQAQTVALAARLADEAGAVPPLV
NLGGGMGVPYFPGDKAVDAAAVGAALAETLDARDRALEDSRFAMELGRWLVAEAGVYLTR
VVDRKVSHGETFLVTDGGLHHQLAASGNFGTVIRRNYPIAVANRFGGEPVETVSVVGCLC
TPLDRLGDQVALPRADVGDLIAVFQAGAYGASASPATFLGQGPAREMLV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgcacgggccgatcccgccgggttttgacgccgacgacgacggcatgctgatg
atcggcagcgaccgcgccgaggcgctggtcgatgccgcgggcgacacgccgctgttcgtc
tatgacagcgcgctgctgaccgcgcgcgtcgccgaatggcgggcggcgatgcccgataat
gtccaattgcatttcgcgatgaaggcgaacccctatgcgccgctgctggcttatatggcg
cggctggtcgacgggttcgatgtcgcgtcgggcggcgaactcaaggcggcgctcgccagc
ggcatggcggcggagcacatcagcttcgcgggtccgggcaagcgcgaccgcgaactcgaa
gcggcgattgcggcgggcgcgacgctcaacctcgaatcggctggcgaagccgaacgcgcg
ctgtcgatcggcgcgcggctcggcgtgacgccgaagctcgccgtgcgggtcaatcccgac
ttcgatctcaagggatcgggcatgaagatgggcggcggcgccaagccgttcggggtcgat
gccgacgaggtgccggtgctggtgcgccgcctgatcgatgccggggccgattggcagggc
tttcatatcttcgcaggatcgcaggcacttgatgcggcggcgatcgccgagacgcaggcg
cagacggtcgcgctggcggcgcggctggccgacgaggccggcgcggtgccgccgctcgtc
aacctcggcggcgggatgggcgtgccctattttcccggcgacaaggcggtcgatgccgcc
gcggttggtgcggcgcttgccgagacgctcgatgcgcgcgaccgggcgctcgaggacagc
cggttcgcgatggaactcggccgctggctcgtcgccgaggcgggggtttacctgacccgc
gtcgtggatcgcaaggtcagccatggcgagaccttcctcgtcaccgacggcggactccac
caccagctggccgcgagcggcaatttcgggacggtgatccgccgcaactatccgatcgcc
gtcgcgaaccgcttcggtggcgagccggtcgagacggtttcggtcgtcggctgtctttgc
accccgctcgaccgcctcggtgaccaggtcgcgctgccacgcgccgatgtcggcgacctg
atcgccgtattccaggccggggcctatggtgcttcggcgagcccggcgacgttcctcggg
caggggccggcgcgcgaaatgctcgtctga
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