Sphingopyxis sp. J-6: V6U71_14515
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Entry
V6U71_14515 CDS
T10764
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6U71_14515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjj03019
]
V6U71_14515
Enzymes [BR:
spjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6U71_14515
Messenger RNA biogenesis [BR:
spjj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6U71_14515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
CMS1
MerR-DNA-bind
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
XMG39051
LinkDB
All DBs
Position
complement(2995989..2997368)
Genome browser
AA seq
459 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLLTYPHRANPRSCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVTTVFGGVPINKQIR
DLSSGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRIAKLLPSR
RQNLFFSATMPKEIAGLADQFLNDPVTVSVTPAATTVEKISQYSTFVEQKEKQALLHSVI
ASEDIDRALIFTRTKHGADRVVRHLAGAKIKAMAIHGNKSQSQRTQALQAFRSGDIKLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGKAISFIAPDERPYMRDI
ERVTRSKSEPMPLPENFNELVRNLPKPAQPPRDTGSQGRNPQRQREDALRQRDGGQPRGE
RGPRREGTATADGQPQRKRRFRPRNKSVGAHKGAVKRVG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttttaacgactttggcctgcacgccgacatcaatcgcgcactcgccgccaag
gattatacccaaccgaccccgatccagacgcaggcgatcccgccgctgatgaagggccgc
gacctgtgcggcatcgcgcagaccggtaccggcaagaccgctggcttctcgctgccctcg
atccatcacctgctgacctatccgcatcgcgccaatccgcgcagctgccggatgctggtg
ctcgccccgacgcgcgagctcgcggcgcagatcgcgcagagctgccgcgactatggccgc
ttcaccaaattgtcggtgacgacggtgttcggtggcgtgccgatcaacaagcagattcgc
gacctgtcgagcggcgtcgatattctcgtcgccactcccggccgcctgctcgacctgatc
gaccagcgcgcgctgcgtctcgacgacgtcgaaatcttcgtcctcgacgaagccgaccag
atgatggacatgggtttcatccactcgctgcgccgtatcgccaaactgctgccgtcgcgc
cgccagaacctgttcttctcggcgacgatgccgaaggaaatcgccgggcttgccgaccag
ttcctcaacgatccggtcaccgtgtcggtgacgcccgccgcgacgaccgtcgaaaagatc
agccaatattcgaccttcgtcgaacagaaggaaaagcaggcgctgctccattcggtcatt
gccagcgaagatatcgaccgcgccctgatcttcacccgcaccaagcatggcgccgaccgc
gtcgtgcgccatctcgcgggcgcgaagatcaaggcgatggcgatccacggcaacaagagc
cagtcgcagcgcacccaagcactgcaggcgttccgatcgggcgatatcaagctgctcgtc
gcgaccgacatcgcggcgcgcggcatcgacgtgtcgggggtcagccatgtgatcaacttc
gagatcccgaacgtacccgaacaatatgtccaccgcatcggccgcaccgcgcgcgccggc
gccgagggcaaggcgatcagctttatcgcgcccgatgagcgcccgtacatgcgcgacatc
gaacgcgtcacgcggagcaagtctgaaccgatgccgctgcccgagaatttcaacgagctg
gtgcgcaacctgccgaagccggcgcagccgccgcgcgacaccggcagccagggccgcaac
ccgcaacgccaacgcgaggacgcgctgcgccagcgcgacggcggccagccgcgcggcgaa
cgcggcccacgccgcgagggcacagcgacggccgacggccagccgcagcgcaagcgccgc
ttccggccccgcaacaagagcgtcggtgcgcacaagggcgcggtgaagcgcgtcggctga
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